View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682-Insertion-10 (Length: 477)
Name: NF5682-Insertion-10
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Complemental strand, 30523417 - 30522962
Alignment:
| Q |
8 |
actctgccccctactatytggaggtatctattttccaatttttgtacgggctttaattttctttctactttggtggctgtactcggaggaggtaagctag |
107 |
Q |
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| T |
30523417 |
actctgccccctactatctggaggtatctattttccaatttttgtacgggctttaattttctttctactttggtggctgtactcggaggaggtaagctag |
30523318 |
T |
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| Q |
108 |
tttctgaagctttagcttggcaacatgtaacacacaatactattctactagagcataactcatatggtcccccagctcccaagtcagttcagtgcatatt |
207 |
Q |
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| T |
30523317 |
tatctgaagctttagcttggcaacatgtaacacacaatactattctactagagcataactcatatggtcccccagctcccaagtcagttcagtgcatatt |
30523218 |
T |
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| Q |
208 |
tgtacatataatatagaatcttgtgatctactataaattagtgtaccttatattgttcatggaactttctattactatatatttaaccatgccaatctat |
307 |
Q |
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| T |
30523217 |
tgtacatataatatagaatcttgtgatctactataaattagtgtaccttatattgttcatggagctttctattactatatatttaaccatgccaatctat |
30523118 |
T |
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| Q |
308 |
attttttagtctaaaactcgataaattgaggtgcagaaaatcctctttgaaacattttagaatttgagttggatctaactgaatcttacataatcggctt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30523117 |
attttttagtctaaaactcgataaattgaggtgcagaaaatcctctttgaaacattttagaatttgagttggatctaactgaaccttacataatcggctt |
30523018 |
T |
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| Q |
408 |
gtaaggggagaaatgcgtttcacttattaacacattcgtatccacatctcatccag |
463 |
Q |
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| T |
30523017 |
gtaaggggagaaatgcgtttcacttattaacacatttgtatccacatctcatccag |
30522962 |
T |
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