View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5682-Insertion-11 (Length: 385)

Name: NF5682-Insertion-11
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5682-Insertion-11
NF5682-Insertion-11
[»] chr7 (1 HSPs)
chr7 (10-385)||(2484387-2484766)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 385
Target Start/End: Original strand, 2484387 - 2484766
Alignment:
Q  10 gaattcctccaaagtcttcccattccgcaacattcaagacatggatgcattacgaatttgaataaaca----aattttcaaggcaaccaaataaccttca 105  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    || |||||||||| ||||||||||||||    
T  2484387 gaattcctccaaagtcttcccattccacaacattcaagacatggatgcatttcgaatttgaataaacagacaaactttcaaggcagccaaataaccttca 2484486  T
Q  106 aagtattttgaatttttt-aaaccataaatttcaacttataaagtgaata--catgcatacatagatatatgtctgtatgcgagacatagaacataaagg 202  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2484487 aagtattttgaatttttttaaaccataaatttcaacttataaagtgaatatacatacatacatagatatatgtctgtatgcgagacatagaacataaagg 2484586  T
Q  203 attgtgacattctctataannnnnnnccctgaattgtctcaatcatcgaaaacaactttgtttctatgtaaccaaatggaccaaaccatcgagagctata 302  Q
    |||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||  |||    
T  2484587 attgtgacattctctataatttttttccctgaattgtctcaataatcgaaaacaactttgtttctatgtaaccaaatggaccaaaccaccgtgagtcata 2484686  T
Q  303 ttagaaaaacacacatttctattccttttttacgcagaagaaaccacgaaatcgtaggaaatgtgacacacatttttcatgaa 385  Q
      || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||    
T  2484687 acag-aaaacacacatttctattccttttttacgcagaagaaaccacgaaatagtaggaaatgtg--acacatttttcatgaa 2484766  T

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