View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5682-Insertion-2 (Length: 1102)

Name: NF5682-Insertion-2
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5682-Insertion-2
NF5682-Insertion-2
[»] chr8 (6 HSPs)
chr8 (422-1031)||(13137516-13138133)
chr8 (8-423)||(13138392-13138807)
chr8 (392-482)||(26461981-26462073)
chr8 (602-656)||(42584556-42584610)
chr8 (423-483)||(43631474-43631534)
chr8 (385-483)||(37167021-37167121)
[»] chr1 (3 HSPs)
chr1 (550-589)||(15889634-15889673)
chr1 (602-641)||(43375644-43375683)
chr1 (423-481)||(15549648-15549706)
[»] chr2 (1 HSPs)
chr2 (412-481)||(2825963-2826032)
[»] chr6 (3 HSPs)
chr6 (412-483)||(34921597-34921668)
chr6 (598-656)||(5096027-5096086)
chr6 (659-696)||(30643018-30643055)
[»] chr7 (4 HSPs)
chr7 (412-482)||(40065789-40065859)
chr7 (659-693)||(7221005-7221039)
chr7 (423-473)||(9533534-9533584)
chr7 (380-483)||(3256632-3256739)
[»] chr5 (3 HSPs)
chr5 (412-474)||(10145354-10145416)
chr5 (423-481)||(39099912-39099970)
chr5 (412-454)||(22873501-22873543)
[»] chr4 (2 HSPs)
chr4 (423-481)||(50086415-50086473)
chr4 (420-481)||(42627951-42628012)
[»] scaffold0102 (1 HSPs)
scaffold0102 (421-474)||(22669-22722)
[»] scaffold0006 (1 HSPs)
scaffold0006 (545-589)||(78387-78431)
[»] chr3 (1 HSPs)
chr3 (412-482)||(40392422-40392492)


Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 422 - 1031
Target Start/End: Complemental strand, 13138133 - 13137516
Alignment:
Q  422 taaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatggcaacatttcccttaataaaaggactcctttttaagtgt 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13138133 taaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatggcaacatttccctcaataaaaggactcctttttaagtgt 13138034  T
Q  522 catcttttttgttgaaaaatttggttcttttataattgtcgttttcaaatttcaaagtagcattaaatattatttaatcaaaatatggttcattatagaa 621  Q
    | | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13138033 cgtttattttgttcaaaaatttggttcttttataattgtcgttttcaaatttcaaagtagcattaaatattatttaatcaaaatatggttcattatagaa 13137934  T
Q  622 cattatgatataatttgatcttgtagccgatcccagtcccacttagcggtgtaaggcttggttgttgttgttgtatccctcttatatattgttgagacgg 721  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||  | |||| ||||||||||||||||||||||||||||||||    
T  13137933 cattatgacgtaatttgatcttgtaaccgatcccagtcccacttagcggtgtaaggcttaatggttgctgttgtatccctcttatatattgttgagacgg 13137834  T
Q  722 agagaaaaataagtgagttagatgacaaattattacaggtagtgtaggaaatagatgaaattgttaatggaaagcagcagaaattaatagattagtttgt 821  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13137833 agagaaaaataagtgagttagatgacaaattattacaggtagtgtaggaaatagatgaaattgttaatggaaagcagcaaaaattaatagattagtttgt 13137734  T
Q  822 gtaaacaaccttataatgactgtt-aaaaggaac-aaatgagtactagttcaattgcccctttgtgtactttgacaaatcactgtttattgcgtttagtg 919  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  13137733 gtaaacaaccttataatgactgttaaaaaggaacaaaatgagtagtagttcaattgcccctttgtgtactttgacaaatcactgttaattgtgtttagtg 13137634  T
Q  920 gatgattaacgaattgtgacgttacatctgttagccatccattgaatgta--ttaccatgaa-tttgac-aaccacag-tattggtgtttagtggatgct 1014  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||| |||||||| || | ||||||||||||||||    
T  13137633 gatgattaacgaattgtgacgttacatctgttagccatccattgaatgtaattaaccatgaattttgacaaaccacagttaattgtgtttagtggatgct 13137534  T
Q  1015 ta-agaatttactaatga 1031  Q
    || || ||||||||||||    
T  13137533 tagaggatttactaatga 13137516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 423
Target Start/End: Complemental strand, 13138807 - 13138392
Alignment:
Q  8 agatgaagattgagattggtgaagttgatgaagagaaaagggttgttgttggagtgaaggaagagatagaaaacaaccctttgatcacagaagctcaaag 107  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  13138807 agatgaagattgagaatggtgaagttgatgaagagaaaagggttgttgttggagtgaaggaagatatagaaaacaagcctttgatcacagaagctcaaag 13138708  T
Q  108 gcgtgaacttgatcatcaagtttatatttttaatcattttgcttataatcttcctcttccttattaccttttgcaatttccaagtaatatgtcaggtttg 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13138707 gcgtgaacttgatcatcaagtttttatttttaatcattttgcttataatcttcctcttccttattaccttttgcaatttccaagtaatatgtcaggtttg 13138608  T
Q  208 ttgaaatttcttatcatacccttttcaattttatagagaatagttaatgcatgttcaccnnnnnnnnnnnnnnnnnnnnagaaagagtatattttgggat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||    
T  13138607 ttgaaatttcttatcatacccttttcaattttatagagaatagttaatgcatgttcaccttttttgttttgttttgttgagaaagagtatattttgggat 13138508  T
Q  308 tgagttgattaagttgtaacttgtgagagttgtgattaacaaaaaaggtcttgcaaacgagtttgtccgagacattttttaagcatttcaaattaaacaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13138507 tgagttgattaagttgtaacttgtgagagttgtgattaacaaaaaaggtcttgcaaacgagtgtgtccgagacattttttaagcatttcaaattaaacaa 13138408  T
Q  408 ttacttaaaaatgtta 423  Q
    ||||||||||||||||    
T  13138407 ttacttaaaaatgtta 13138392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 392 - 482
Target Start/End: Original strand, 26461981 - 26462073
Alignment:
Q  392 atttcaaattaaacaattacttaaaa--atgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatg 482  Q
    |||| |||||||||||||  ||||||  ||||||||||||||||||| ||||| |||||| ||| | ||||||||| |||||||  |||||||    
T  26461981 attttaaattaaacaattttttaaaaaaatgttaaatattttgatttttaatgtattgaacacatatatttttataaatacttataacttatg 26462073  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 602 - 656
Target Start/End: Original strand, 42584556 - 42584610
Alignment:
Q  602 aaatatggttcattatagaacattatgatataatttgatcttgtagccgatccca 656  Q
    |||||||||| || ||||||||||||||  |||||||||||||||||||| ||||    
T  42584556 aaatatggtttatgatagaacattatgacgtaatttgatcttgtagccgacccca 42584610  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 43631534 - 43631474
Alignment:
Q  423 aaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatgg 483  Q
    ||||||||| |||| ||||||||||| |||||| ||||||||| |||| ||| ||||||||    
T  43631534 aaatattttaatttctaatgcattgattacacatatttttataaatacatactacttatgg 43631474  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 385 - 483
Target Start/End: Original strand, 37167021 - 37167121
Alignment:
Q  385 tttaagcatttcaaattaaacaatta--cttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatg 482  Q
    ||||| ||||||||| ||||||||||  ||| ||||  ||||||| || |||||  |||||||||||||||| |||||| ||  ||| |||||| |||||    
T  37167021 tttaaacatttcaaaataaacaattattcttcaaaaaattaaatagttcgatttccaatgcattgaatacacgcattttcatgaatagttaccatttatg 37167120  T
Q  483 g 483  Q
    |    
T  37167121 g 37167121  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 550 - 589
Target Start/End: Complemental strand, 15889673 - 15889634
Alignment:
Q  550 tttataattgtcgttttcaaatttcaaagtagcattaaat 589  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15889673 tttataattgtcgttttcaaatttcaaagtagcattaaat 15889634  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 602 - 641
Target Start/End: Complemental strand, 43375683 - 43375644
Alignment:
Q  602 aaatatggttcattatagaacattatgatataatttgatc 641  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  43375683 aaatatggttcatgatagaacattatgacataatttgatc 43375644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 15549648 - 15549706
Alignment:
Q  423 aaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttat 481  Q
    |||||||| |||||  |||||||||| |||||||||||||||| |||||| | ||||||    
T  15549648 aaatatttcgattttcaatgcattgattacacacatttttataaatacttgctacttat 15549706  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 412 - 481
Target Start/End: Complemental strand, 2826032 - 2825963
Alignment:
Q  412 ttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttat 481  Q
    ||||||| || |||||||| |||||  |||||||||| |||||||||||||||| |||||||| ||||||    
T  2826032 ttaaaaaagtaaaatatttcgatttccaatgcattgattacacacatttttataaatacttactacttat 2825963  T

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Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 412 - 483
Target Start/End: Original strand, 34921597 - 34921668
Alignment:
Q  412 ttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatgg 483  Q
    ||||||| |||||||||||| |||| ||||||| | |||||||||||||| ||| ||| ||| |||||||||    
T  34921597 ttaaaaaagttaaatattttaatttttaatgcaattaatacacacattttcataaatatttatcacttatgg 34921668  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 598 - 656
Target Start/End: Original strand, 5096027 - 5096086
Alignment:
Q  598 atcaaaatatggttcattatagaacattatgatataatttgatct-tgtagccgatccca 656  Q
    |||||||||||||| || |||||||||||||   ||||||||||| ||||||||||||||    
T  5096027 atcaaaatatggtttatgatagaacattatggcgtaatttgatctatgtagccgatccca 5096086  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 659 - 696
Target Start/End: Original strand, 30643018 - 30643055
Alignment:
Q  659 cccacttagcggtgtaaggcttggttgttgttgttgta 696  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  30643018 cccacttagcgggttaaggcttggttgttgttgttgta 30643055  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 412 - 482
Target Start/End: Complemental strand, 40065859 - 40065789
Alignment:
Q  412 ttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatg 482  Q
    ||||||| |||||||||||||||||  ||| ||| |||||||   ||||||||| ||||||||||||||||    
T  40065859 ttaaaaaagttaaatattttgattttcaatacatcgaatacatgtatttttataaatacttaccacttatg 40065789  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 659 - 693
Target Start/End: Original strand, 7221005 - 7221039
Alignment:
Q  659 cccacttagcggtgtaaggcttggttgttgttgtt 693  Q
    ||||||||| |||||||||||||||||||||||||    
T  7221005 cccacttagtggtgtaaggcttggttgttgttgtt 7221039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 423 - 473
Target Start/End: Complemental strand, 9533584 - 9533534
Alignment:
Q  423 aaatattttgatttgtaatgcattgaatacacacatttttatagatactta 473  Q
    ||||||||||||||  |||||||||| ||||| |||||||||| |||||||    
T  9533584 aaatattttgattttcaatgcattgattacacgcatttttataaatactta 9533534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 380 - 483
Target Start/End: Complemental strand, 3256739 - 3256632
Alignment:
Q  380 cattttttaagcatttcaaattaaacaatta--ctt--aaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttacc 475  Q
    |||| ||||||||||||||| ||| ||||||  |||  ||||| || |||| ||| |||||  |||||| |||||||||| ||||| ||| ||||||| |    
T  3256739 cattctttaagcatttcaaaataagcaattattctttaaaaaaagtcaaatgtttcgatttccaatgcactgaatacacatattttcataaatacttatc 3256640  T
Q  476 acttatgg 483  Q
    ||||||||    
T  3256639 acttatgg 3256632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 10145416 - 10145354
Alignment:
Q  412 ttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttac 474  Q
    ||||||| || ||||||||||||||  |||||||| | |||||||||||||||| ||||||||    
T  10145416 ttaaaaaagtaaaatattttgattttgaatgcattaattacacacatttttataaatacttac 10145354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 39099912 - 39099970
Alignment:
Q  423 aaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttat 481  Q
    |||||||| |||||  ||||||| ||||||||| ||||||||| |||||||||||||||    
T  39099912 aaatatttcgattttcaatgcatcgaatacacatatttttataaatacttaccacttat 39099970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 412 - 454
Target Start/End: Original strand, 22873501 - 22873543
Alignment:
Q  412 ttaaaaatgttaaatattttgatttgtaatgcattgaatacac 454  Q
    ||||||| |||||||||||| |||| |||||||||||||||||    
T  22873501 ttaaaaaagttaaatattttaatttttaatgcattgaatacac 22873543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 50086473 - 50086415
Alignment:
Q  423 aaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttat 481  Q
    ||||||||||||||  ||||||||||||||||| ||||| ||| || ||||||||||||    
T  50086473 aaatattttgattttcaatgcattgaatacacatattttcataaatgcttaccacttat 50086415  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 420 - 481
Target Start/End: Complemental strand, 42628012 - 42627951
Alignment:
Q  420 gttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttat 481  Q
    |||||||||||||||||  ||| ||||||||| ||| ||||| ||  |||||||||||||||    
T  42628012 gttaaatattttgattttcaatacattgaatatacatattttcattaatacttaccacttat 42627951  T

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Target: scaffold0102 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 421 - 474
Target Start/End: Original strand, 22669 - 22722
Alignment:
Q  421 ttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttac 474  Q
    ||||||||||||||||  |||| ||||||| ||||||||||||| |||||||||    
T  22669 ttaaatattttgattttcaatgaattgaatccacacatttttatcgatacttac 22722  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 545 - 589
Target Start/End: Original strand, 78387 - 78431
Alignment:
Q  545 gttcttttataattgtcgttttcaaatttcaaagtagcattaaat 589  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||    
T  78387 gttcctttataattgtcgttttcaaatttcaaactagaattaaat 78431  T

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Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 412 - 482
Target Start/End: Original strand, 40392422 - 40392492
Alignment:
Q  412 ttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatg 482  Q
    ||||||| |||||||||||| |||| ||||||||||| |||| | ||||| ||| ||| |||| |||||||    
T  40392422 ttaaaaaagttaaatatttttatttctaatgcattgattacatatattttcataaatatttactacttatg 40392492  T

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