View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5682-Insertion-3 (Length: 1095)

Name: NF5682-Insertion-3
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5682-Insertion-3
NF5682-Insertion-3
[»] chr4 (3 HSPs)
chr4 (309-974)||(201084-201755)
chr4 (125-227)||(201837-201939)
chr4 (10-114)||(201922-202026)
[»] scaffold0728 (4 HSPs)
scaffold0728 (317-692)||(1783-2161)
scaffold0728 (317-692)||(6723-7101)
scaffold0728 (720-759)||(2186-2225)
scaffold0728 (720-759)||(7126-7165)
[»] chr1 (5 HSPs)
chr1 (357-692)||(32794075-32794409)
chr1 (380-688)||(1073182-1073490)
chr1 (314-684)||(25090200-25090570)
chr1 (581-692)||(16657532-16657643)
chr1 (579-645)||(30475250-30475316)
[»] chr8 (2 HSPs)
chr8 (407-651)||(38540118-38540363)
chr8 (563-692)||(36591435-36591564)
[»] chr3 (2 HSPs)
chr3 (378-619)||(16239135-16239376)
chr3 (392-692)||(19924905-19925200)
[»] chr6 (2 HSPs)
chr6 (360-692)||(17186023-17186356)
chr6 (580-696)||(14460199-14460314)
[»] chr5 (4 HSPs)
chr5 (377-552)||(28887588-28887763)
chr5 (377-493)||(28990497-28990611)
chr5 (581-692)||(28903085-28903196)
chr5 (581-692)||(28939480-28939591)
[»] chr7 (1 HSPs)
chr7 (578-681)||(31078165-31078268)


Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 309 - 974
Target Start/End: Complemental strand, 201755 - 201084
Alignment:
Q  309 ctggctgcggggagatcgagtcgaatgttcatttattcttatcctgcagtatttttggccaggtgtgccagcttgttgggcattggttaggtgttcagtc 408  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  201755 ctggttgcggggagatcgagttgaatgttcatttattcttatcctgcagtatttttggtcaggtgtgccagcttgttgggcattggttaggtgtttagtc 201656  T
Q  409 agtagaccccttaaccattgttgatcactatcttcagtttggtacgtcctcgggtcttgcaagatcaaggtgttcttttatgtatccgatatggtataca 508  Q
    ||  |||||||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  201655 agctgaccccttaatcattgctgatcactatcttcagtttggtacgtccttaggtcttgcaagatcaaggtgttcttttatgtatccgatatggtatgca 201556  T
Q  509 agctcttgggtcatttggaaggaaaagaatgcgaaaattttccgttctcaggatagcacactttatcaacttttggaaaatatcaagcttatttcttttt 608  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  201555 agctcttgggtcatttggaagaaaaagaatgcgagaattttccgttctcaggataccacactttatcaacttttgaaaaatatcaagcttatttcttttt 201456  T
Q  609 ggtggtacaaatcacaatttgacgtttatcattataagtttcacaaatggtgtcagaacccatttttatgtttgggtgttggctgatgnnnnnnnnnnnc 708  Q
    ||||||||||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||           |    
T  201455 ggtggtacaaatcacaatttgtcgtttataattataagttttacgaatggtgttagaacccatttttatgtttgggtgttggctgatg-tttttattttc 201357  T
Q  709 tgtctgaaactctcatgtaattattggctatcctctttggaacaccctatgttggaggaatagtatgttggtatcatatatctcattttaatttcttnnn 808  Q
    ||||||||||||| |||||||||||| ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||       
T  201356 tgtctgaaactctaatgtaattattgactatcctctttgacacaccctatgttagaggaatagtatgttggtatcatatatctcattttgatttcttaaa 201257  T
Q  809 nnnngaaacatattatatttcattttttcctttatatttgaccccttgtaaaatcgatgttaccttcgttgctgattg-aattgtaccgtttcccttgtc 907  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  201256 aaaagaaacatattatatttcattttttcctttatatttgaccccttgtaaaatcaatgttaccttcgttgctgattgaaattgtaccgtttcccttgtc 201157  T
Q  908 cggtagg-ttttaggctgtt--gttgtatgataggga-ttag-aaaggcgatg-atagattccctttaaaaaa 974  Q
     |||||| ||||||| ||||   |||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  201156 tggtaggtttttaggttgtttgtttgtatgatagggatttagaaaaggcgatgaatagattccctttaaaaaa 201084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 201939 - 201837
Alignment:
Q  125 aacttaattggttatattgaagaaaaaatattgttagtatgtttagtacaacattaattatagatgaatttgactcttgaaaaaatcattaagcccaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  201939 aacttaattggttatattgaagaaaaaatattgttagtatgtttagtacaacattaattatagaagaatttgactcttgaaaaaatcattaagcccaaca 201840  T
Q  225 ttc 227  Q
    |||    
T  201839 ttc 201837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 202026 - 201922
Alignment:
Q  10 aaatgcaggagagaaatttggccgtagtggaccaatttcataagaagagattctgaatataaaatggatgatccatctcttgctaataacttaattggtt 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  202026 aaatgtaggagagaaatttggccgtagtggaccaatttcataagaagagattctgaatataaaatggatgatgcatctcttgctaataacttaattggtt 201927  T
Q  110 atatt 114  Q
    |||||    
T  201926 atatt 201922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0728 (Bit Score: 129; Significance: 3e-66; HSPs: 4)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 317 - 692
Target Start/End: Original strand, 1783 - 2161
Alignment:
Q  317 ggggagatcgagtcgaatgttcatttattcttatcctgcagtatttttggccaggtgtgccagcttgttgggcattggttaggtgttcagtcagtagacc 416  Q
    |||| |||||||||  |||| || |||||||| || |||||  ||||||| | ||| || ||||||||| ||| |||||| |||||||| |||| |||||    
T  1783 ggggtgatcgagtcagatgtccacttattcttgtcttgcagcgtttttgggccggtttggcagcttgttcggcgttggttgggtgttcattcagcagacc 1882  T
Q  417 ccttaaccattgttgatcactatcttcagtttggtacgtcctcgggtcttgcaagatcaaggtgttcttttatgtatccgatatggtatacaagctcttg 516  Q
    ||||||||||||| || |||||||||||||||||||| |||||  ||||||||| |||| ||||||||||||||||||  || |||||| |||  |||||    
T  1883 ccttaaccattgtcgaccactatcttcagtttggtacttcctcatgtcttgcaaaatcacggtgttcttttatgtatctaatctggtatgcaaattcttg 1982  T
Q  517 ggtcatttggaaggaaaagaatgcgaaaattttccgttctcaggatagcacactttatcaacttttggaaaatatcaagcttatttctttttggtggtac 616  Q
    ||||||||||||||||| |||| | | |||||||| | |  | || ||||||| |||||| || || ||||| ||||||||| ||||||||||||| ||     
T  1983 ggtcatttggaaggaaaggaattctataattttccatgcaaaagagagcacaccttatcagctcttagaaaacatcaagcttctttctttttggtgatat 2082  T
Q  617 aaatcacaatttgacgtttatcattataagtttcaca---aatggtgtcagaacccatttttatgtttgggtgttggct 692  Q
    ||| ||||||||   |||||||||||||| ||| | |   | ||||||||||||||||||||||| ||||||| |||||    
T  2083 aaagcacaattttttgtttatcattataattttaataatgattggtgtcagaacccatttttatgcttgggtgctggct 2161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0728; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 317 - 692
Target Start/End: Original strand, 6723 - 7101
Alignment:
Q  317 ggggagatcgagtcgaatgttcatttattcttatcctgcagtatttttggccaggtgtgccagcttgttgggcattggttaggtgttcagtcagtagacc 416  Q
    |||| |||||||||  |||| || |||||||| || |||||  ||||||| | ||| || ||||||||| ||| |||||| |||||||| |||| |||||    
T  6723 ggggtgatcgagtcagatgtccacttattcttgtcttgcagcgtttttgggccggtttggcagcttgttcggcgttggttgggtgttcattcagcagacc 6822  T
Q  417 ccttaaccattgttgatcactatcttcagtttggtacgtcctcgggtcttgcaagatcaaggtgttcttttatgtatccgatatggtatacaagctcttg 516  Q
    ||||||||||||| || |||||||||||||||||||| |||||  ||||||||| |||| ||||||||||||||||||  || |||||| |||  |||||    
T  6823 ccttaaccattgtcgaccactatcttcagtttggtacttcctcatgtcttgcaaaatcacggtgttcttttatgtatctaatctggtatgcaaattcttg 6922  T
Q  517 ggtcatttggaaggaaaagaatgcgaaaattttccgttctcaggatagcacactttatcaacttttggaaaatatcaagcttatttctttttggtggtac 616  Q
    ||||||||||||||||| |||| | | |||||||| | |  | || ||||||| |||||| || || ||||| ||||||||| ||||||||||||| ||     
T  6923 ggtcatttggaaggaaaggaattctataattttccatgcaaaagagagcacaccttatcagctcttagaaaacatcaagcttctttctttttggtgatat 7022  T
Q  617 aaatcacaatttgacgtttatcattataagtttcaca---aatggtgtcagaacccatttttatgtttgggtgttggct 692  Q
    ||| ||||||||   |||||||||||||| ||| | |   | ||||||||||||||||||||||| ||||||| |||||    
T  7023 aaagcacaattttttgtttatcattataattttaataatgattggtgtcagaacccatttttatgcttgggtgctggct 7101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0728; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 720 - 759
Target Start/End: Original strand, 2186 - 2225
Alignment:
Q  720 ctcatgtaattattggctatcctctttggaacaccctatg 759  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  2186 ctcatgtaattattggctatcctctttggcacaccttatg 2225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0728; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 720 - 759
Target Start/End: Original strand, 7126 - 7165
Alignment:
Q  720 ctcatgtaattattggctatcctctttggaacaccctatg 759  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  7126 ctcatgtaattattggctatcctctttggcacaccttatg 7165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 357 - 692
Target Start/End: Original strand, 32794075 - 32794409
Alignment:
Q  357 gtatttttggccaggtgtgccagcttgttgggcattggttaggtgttcagtcagtagaccccttaaccattgttgatcactatcttcagtttggtacgtc 456  Q
    ||||||| || ||||| || || |||||| |||  ||||| |||||||| |||| ||||||||||||||||||| | || | | | || |||||||| ||    
T  32794075 gtattttcgggcaggtttgacaacttgttcggcgatggttgggtgttcattcagcagaccccttaaccattgttaaccattttatccaatttggtac-tc 32794173  T
Q  457 ctcgggtcttgcaagatcaaggtgttcttttatgtatccgatatggtatacaagctcttgggtcatttggaaggaaaagaatgcgaaaattttccgttct 556  Q
     || |||||||||| |||  ||||||||||||||||||  ||||||| | |||| || || || |||||||||||||||||||| | || |||||| ||     
T  32794174 ttcaggtcttgcaaaatcgcggtgttcttttatgtatctcatatggtttgcaagttcatgagtaatttggaaggaaaagaatgctagaactttccgatca 32794273  T
Q  557 caggatagcacactttatcaacttttggaaaatatcaagcttatttctttttggtggtacaaatcacaatttgacgtttatcattataagtttcacaaat 656  Q
     | || ||||||||||| || || ||| |||||||||||||| |||| ||||||||||| ||| | |||||||  |||||||||| ||| || ||  | |    
T  32794274 aaagagagcacactttaccagctcttgaaaaatatcaagcttctttccttttggtggtataaagcgcaatttgttgtttatcattttaaattccatgatt 32794373  T
Q  657 ggtgtcagaacccatttttatgtttgggtgttggct 692  Q
    ||| |||| |||| || ||||||||| |||||||||    
T  32794374 ggtatcagcaccctttgttatgtttgagtgttggct 32794409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 380 - 688
Target Start/End: Complemental strand, 1073490 - 1073182
Alignment:
Q  380 cttgttgggcattggttaggtgttcagtcagtagaccccttaaccattgttgatcactatcttcagtttggtacgtcctcgggtcttgcaagatcaaggt 479  Q
    |||||| ||||||||||  ||||||| |||| ||| || | ||| ||||| ||||| | |||| |||||||||| ||||| |||||||||| ||||||||    
T  1073490 cttgttcggcattggttgagtgttcattcagaagatccttcaacaattgtggatcattttctttagtttggtacttcctcaggtcttgcaaaatcaaggt 1073391  T
Q  480 gttcttttatgtatccgatatggtatacaagctcttgggtcatttggaaggaaaagaatgcgaaaattttccgttctcaggatagcacactttatcaact 579  Q
    ||||||||||||||   || |||| | ||||||  ||||| |||| |||||||| |||||| | ||||||  || | || || ||||||| ||||||| |    
T  1073390 gttcttttatgtatttaatctggtttgcaagcttgtgggtgatttagaaggaaacgaatgctagaattttttgtgcacaagaaagcacaccttatcaatt 1073291  T
Q  580 tttggaaaatatcaagcttatttctttttggtggtacaaatcacaatttgacgtttatcattataagtttcacaaatggtgtcagaacccatttttatgt 679  Q
    ||||||||| ||||| ||| |||  ||||||||||  ||| | || ||||  | || ||||||||  |||||  | |||||||| |||||||||||||||    
T  1073290 tttggaaaacatcaaacttcttttcttttggtggtttaaagctcattttgttgcttttcattatagatttcatgattggtgtcataacccatttttatgt 1073191  T
Q  680 ttgggtgtt 688  Q
    |||||||||    
T  1073190 ttgggtgtt 1073182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 684
Target Start/End: Complemental strand, 25090570 - 25090200
Alignment:
Q  314 tgcggggagatcgagtcgaatgttcatttattcttatcctgcagtatttttggccaggtgtgccagcttgttgggcattggttaggtgttcagtcagtag 413  Q
    ||||| |||||||||||| || ||||| | ||||| || || ||  | ||||| ||||| || ||||||||| | ||||| || || |||    ||| ||    
T  25090570 tgcggagagatcgagtcggatattcatcttttcttgtcttgtagcgtgtttggacaggtttggcagcttgttcgacattgattgggagtttttacagcag 25090471  T
Q  414 accccttaaccattgttgatcactatcttcagtttggtacgtcctcgggtcttgcaagatcaaggtgttcttttatgtatccgatatggtatacaagctc 513  Q
    | ||||||||||||   || || ||||||||||||||||| ||||| ||||||||||  ||   | ||||||||||| |    || ||||    |||| |    
T  25090470 atcccttaaccattaccgaccattatcttcagtttggtacttcctcaggtcttgcaaattcgcagcgttcttttatgcagttaatctggttcggaagcac 25090371  T
Q  514 ttgggtcatttggaaggaaaagaatgcgaaaattttccgttctcaggatagcacactttatcaacttttggaaaatatcaagcttatttctttttggtgg 613  Q
    |||| | ||||||||||||| |||||| | |||||||  | |  | || ||||||| |||||| || |||| ||||||||||||| |||| ||||||| |    
T  25090370 ttggttaatttggaaggaaaggaatgctagaattttctttccaaaagagagcacaccttatcatctcttgggaaatatcaagcttctttccttttggtag 25090271  T
Q  614 tacaaatcacaatttgacgtttatcattataagtttcacaaatggtgtcagaacccatttttatgtttggg 684  Q
    |  ||| |||| |||   ||||||||||||||||| ||    ||||| || |||||||||||| |||||||    
T  25090270 tttaaagcacattttactgtttatcattataagttccatggttggtgccataacccatttttaagtttggg 25090200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 581 - 692
Target Start/End: Original strand, 16657532 - 16657643
Alignment:
Q  581 ttggaaaatatcaagcttatttctttttggtggtacaaatcacaatttgacgtttatcattataagtttcacaaatggtgtcagaacccatttttatgtt 680  Q
    ||||||||||| |||||| |||||||||||||||||||| | |||||||  ||||| |||| ||| |||||  | |||||| || |  | || ||||| |    
T  16657532 ttggaaaatataaagcttctttctttttggtggtacaaagcgcaatttgttgtttaccattttaaatttcatgactggtgttagcattctttgttatgct 16657631  T
Q  681 tgggtgttggct 692  Q
    ||||||||||||    
T  16657632 tgggtgttggct 16657643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 30475250 - 30475316
Alignment:
Q  579 ttttggaaaatatcaagcttatttctttttggtggtacaaatcacaatttgac-gtttatcattataa 645  Q
    |||||||||||||||| ||| |||||||||||||||  ||| ||| ||||||| ||||||||||||||    
T  30475250 ttttggaaaatatcaaacttctttctttttggtggtttaaaacac-atttgactgtttatcattataa 30475316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 407 - 651
Target Start/End: Original strand, 38540118 - 38540363
Alignment:
Q  407 tcagtagaccccttaaccattgttgatcactatcttcagtttggtacgtcctcgggtcttgcaagatcaaggtgttctttta-tgtatccgatatggtat 505  Q
    |||| |||||||| | | || |||||||||||||||||||||||||| || || |||||||||| ||||  ||||| ||||  ||||||  || |||| |    
T  38540118 tcagaagacccctcatctatagttgatcactatcttcagtttggtacttcttcaggtcttgcaaaatcattgtgttttttttctgtatctcatttggttt 38540217  T
Q  506 acaagctcttgggtcatttggaaggaaaagaatgcgaaaattttccgttctcaggatagcacactttatcaacttttggaaaatatcaagcttatttctt 605  Q
     |||| ||||||  |||||||||||||| ||||||  ||| ||||||| |  | || ||||||| |||||| || ||| |||||||||||||| |||| |    
T  38540218 gcaagttcttggaccatttggaaggaaaggaatgctcaaagtttccgtgcaaaagagagcacaccttatcagctcttgaaaaatatcaagcttctttcct 38540317  T
Q  606 tttggtggtacaaatcacaatttgacgtttatcattataagtttca 651  Q
    |||||||||||||| |||| ||||  ||||||| || ||| |||||    
T  38540318 tttggtggtacaaaacacagtttgttgtttatccttttaaatttca 38540363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 563 - 692
Target Start/End: Original strand, 36591435 - 36591564
Alignment:
Q  563 agcacactttatcaacttttggaaaatatcaagcttatttctttttggtggtacaaatcacaatttgacgtttatcattataagtttcacaaatggtgtc 662  Q
    ||||| |||| |||||| |||||||||||||||||| | ||   ||| ||||| ||| | |||||||  |||||||||| ||| |||||  | |||||||    
T  36591435 agcaccctttttcaactcttggaaaatatcaagcttctctccacttgatggtataaagcgcaatttgttgtttatcattttaattttcatgattggtgtc 36591534  T
Q  663 agaacccatttttatgtttgggtgttggct 692  Q
    || |||  || ||||||||||||| |||||    
T  36591535 agcaccttttgttatgtttgggtgatggct 36591564  T

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Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 378 - 619
Target Start/End: Original strand, 16239135 - 16239376
Alignment:
Q  378 agcttgttgggcattggttaggtgttcagtcagtagaccccttaaccattgttgatcactatcttcagtttggtacgtcctcgggtcttgcaagatcaag 477  Q
    |||||||| ||| |||||| ||||||||  | | |||||| |||||||| ||||| |||| | ||||||||||||| || || |||||||||| |||  |    
T  16239135 agcttgttcggcgttggttgggtgttcatcctgcagaccctttaaccatcgttgaccactttattcagtttggtacttcttcaggtcttgcaaaatcgcg 16239234  T
Q  478 gtgttcttttatgtatccgatatggtatacaagctcttgggtcatttggaaggaaaagaatgcgaaaattttccgttctcaggatagcacactttatcaa 577  Q
    |||||||||||||||||  || |||| | |||| ||||| ||||||||||||||||  ||||  | ||||||||| ||  | || ||||||   | |||     
T  16239235 gtgttcttttatgtatctcatttggtttgcaagttcttgagtcatttggaaggaaagaaatgttataattttccgatcaaaagagagcacatcatgtcag 16239334  T
Q  578 cttttggaaaatatcaagcttatttctttttggtggtacaaa 619  Q
    || ||||||||||| |||||| |||||||| |||||||||||    
T  16239335 ctcttggaaaatataaagcttctttcttttaggtggtacaaa 16239376  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 392 - 692
Target Start/End: Complemental strand, 19925200 - 19924905
Alignment:
Q  392 tggttaggtgttcagtcagtagaccccttaaccattgttgatcactatcttcagtttggtacgtcctcgggtcttgcaagatcaaggtgttcttttatgt 491  Q
    ||||| |||||||| |||  ||| |||| ||||||||| ||||| | ||||||||||||||| ||||| |||||| ||| ||||  ||||||||||||||    
T  19925200 tggttgggtgttcattcaacagatccctcaaccattgtggatcattttcttcagtttggtacttcctcaggtcttccaaaatcacagtgttcttttatgt 19925101  T
Q  492 atccgatatggtatacaagctcttgggtcatttggaaggaaaagaatgcgaaaattttccgttctcaggatagcacactttatcaacttttggaaaatat 591  Q
    ||   ||||||| | || |||||||||| |||||||||||    ||||| | |||||||||| |    ||  |||||| |||||| ||||||||||| ||    
T  19925100 atttaatatggtttgcaggctcttgggtgatttggaagga----aatgctagaattttccgtgcaatagaatgcacaccttatcagcttttggaaaacat 19925005  T
Q  592 caagcttatttctttttggtggtacaaatcacaatttgacgtttatcattataagtttcacaaatggtgtcagaacccatttttatgtttgggtgttggc 691  Q
    ||||||| |||| ||||||| ||  ||| | || ||||| | || ||||||||| ||  |  |  |||| || |||||||||||||||||||||||||||    
T  19925004 caagcttctttccttttggt-gtttaaagctcattttgatgcttttcattataaattaaatgatcggtgccataacccatttttatgtttgggtgttggc 19924906  T

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Target: chr6 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 360 - 692
Target Start/End: Original strand, 17186023 - 17186356
Alignment:
Q  360 tttttggccaggtgtgccagcttgttgggcattggttaggtgttcagtcagtagaccccttaaccattgttgatcactatcttcagtttggtacgtcctc 459  Q
    ||||||| ||||| || || |||||| |||  ||| | |||||||| | || ||| ||| |||||||||| || ||||||||||| |||||||| || |     
T  17186023 tttttgggcaggtttggcaacttgttcggcgctggatgggtgttcatttagcagagcccataaccattgtcgaccactatcttcaatttggtacttcata 17186122  T
Q  460 gggtcttgcaagatcaaggtgttctttt-atgtatccgatatggtatacaagctcttgggtcatttggaaggaaaagaatgcgaaaattttccgttctca 558  Q
     |||||||||| |||  |||||| |||| |||||||  ||||||| | |||| | |||||||||||||||||||| |||||| | ||||||||| |   |    
T  17186123 aggtcttgcaaaatcgcggtgttttttttatgtatctcatatggtttgcaagtttttgggtcatttggaaggaaatgaatgctagaattttccgatagaa 17186222  T
Q  559 ggatagcacactttatcaacttttggaaaatatcaagcttatttctttttggtggtacaaatcacaatttgacgtttatcattataagtttcacaaatgg 658  Q
      | ||||||| |||||| || |||||||||||||||||| |||| ||||  || || ||| |  ||||||  |||||||||| | || ||||  | |||    
T  17186223 aaagagcacaccttatcagctcttggaaaatatcaagcttctttcatttttatgatataaagcgtaatttgttgtttatcattttcaggttcatgattgg 17186322  T
Q  659 tgtcagaacccatttttatgtttgggtgttggct 692  Q
    |||||| |||| || ||||| ||||||| |||||    
T  17186323 tgtcagcaccctttgttatgcttgggtgctggct 17186356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 580 - 696
Target Start/End: Complemental strand, 14460314 - 14460199
Alignment:
Q  580 tttggaaaatatcaagcttatttctttttggtggtacaaatcacaatttgacgtttatcattataagtttcacaaatggtgtcagaacccatttttatgt 679  Q
    |||| |||||||||||||| |||||||| ||| ||  ||| ||| |||||| |||||||||| |||||||||| ||||||||||||||| |||||||||     
T  14460314 tttgaaaaatatcaagcttctttctttt-ggttgtctaaagcactatttgatgtttatcattctaagtttcacgaatggtgtcagaaccaatttttatgc 14460216  T
Q  680 ttgggtgttggctgatg 696  Q
    ||||||| |||||||||    
T  14460215 ttgggtgctggctgatg 14460199  T

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Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 377 - 552
Target Start/End: Original strand, 28887588 - 28887763
Alignment:
Q  377 cagcttgttgggcattggttaggtgttcagtcagtagaccccttaaccattgttgatcactatcttcagtttggtacgtcctcgggtcttgcaagatcaa 476  Q
    ||||||||| ||| |||||| |||||||| || |  ||||| |||||||| ||||| |||||| | ||||||||||| || || |||||||||| |||      
T  28887588 cagcttgttcggcgttggttgggtgttcattctgctgaccctttaaccatcgttgaccactatatacagtttggtacttcttcaggtcttgcaaaatcgt 28887687  T
Q  477 ggtgttcttttatgtatccgatatggtatacaagctcttgggtcatttggaaggaaaagaatgcgaaaattttccg 552  Q
    ||||||||||||||||||  || |||| | |||| |||||||| | |||||||||||  ||||| | |||||||||    
T  28887688 ggtgttcttttatgtatctcatttggtttgcaagttcttgggttagttggaaggaaagaaatgctagaattttccg 28887763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 377 - 493
Target Start/End: Complemental strand, 28990611 - 28990497
Alignment:
Q  377 cagcttgttgggcattggttaggtgttcagtcagtagaccccttaaccattgttgatcactatcttcagtttggtacgtcctcgggtcttgcaagatcaa 476  Q
    ||||||||| ||| |||||| || ||||| || |  ||||| ||||||||  |||| |||||| ||||||||||||| || || |||||||||| ||||     
T  28990611 cagcttgttcggcgttggttgggcgttcattctgctgaccctttaaccatcattgaccactatattcagtttggtacttcttcaggtcttgcaaaatca- 28990513  T
Q  477 ggtgttcttttatgtat 493  Q
     ||||||||||||||||    
T  28990512 -gtgttcttttatgtat 28990497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 581 - 692
Target Start/End: Original strand, 28903085 - 28903196
Alignment:
Q  581 ttggaaaatatcaagcttatttctttttggtggtacaaatcacaatttgacgtttatcattataagtttcacaaatggtgtcagaacccatttttatgtt 680  Q
    ||||||||||| |||||| |||||||||||||||||||| | |||||||  ||||| |||| ||| |||||  | |||||| || |  | || ||||| |    
T  28903085 ttggaaaatataaagcttctttctttttggtggtacaaagcgcaatttgttgtttaccattttaaatttcatgactggtgttagcattctttgttatgct 28903184  T
Q  681 tgggtgttggct 692  Q
    ||||||||||||    
T  28903185 tgggtgttggct 28903196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 581 - 692
Target Start/End: Original strand, 28939480 - 28939591
Alignment:
Q  581 ttggaaaatatcaagcttatttctttttggtggtacaaatcacaatttgacgtttatcattataagtttcacaaatggtgtcagaacccatttttatgtt 680  Q
    ||||||||||| |||||| |||||||||||||||||||| | |||||||  ||||| |||| ||| |||||  | |||||| || |  | || ||||| |    
T  28939480 ttggaaaatataaagcttctttctttttggtggtacaaagcgcaatttgttgtttaccattttaaatttcatgactggtgttagcattctttgttatgct 28939579  T
Q  681 tgggtgttggct 692  Q
    ||||||||||||    
T  28939580 tgggtgttggct 28939591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 578 - 681
Target Start/End: Complemental strand, 31078268 - 31078165
Alignment:
Q  578 cttttggaaaatatcaagcttatttctttttggtggtacaaatcacaatttgacgtttatcattataagtttcacaaatggtgtcagaacccatttttat 677  Q
    |||||||| || ||||| ||| |||| ||||| ||||| ||  | |||||||  | |||||||||||| ||||| ||||| |||| ||| ||||||||||    
T  31078268 cttttggagaacatcaaacttctttccttttgatggtataaggctcaatttgtggcttatcattataaatttcataaatgatgtcggaatccatttttat 31078169  T
Q  678 gttt 681  Q
    ||||    
T  31078168 gttt 31078165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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