View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682-Insertion-4 (Length: 1044)
Name: NF5682-Insertion-4
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 472 - 1023
Target Start/End: Complemental strand, 31693387 - 31692826
Alignment:
| Q |
472 |
tgaattctgtagtgagagttatatttcagttacaaatagatatgtttgcctcactcttttttctgttgttaaaatttagcaatgatgaaagttctatttg |
571 |
Q |
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| T |
31693387 |
tgaattctgtagtgagagttatacttcagttacaaatagatatgtttgcctcactctttaccctgctattaaaatttagcaatgatgaa-gttctatttg |
31693289 |
T |
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| Q |
572 |
ccaaggcttgaaaatcattcaccttgcatattagatataaagttggttatatcagctagtagtgatataactaactttatatctaatagtgtgtgcgatt |
671 |
Q |
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| T |
31693288 |
ccaaggcttgaaaatccttcaccttgcatattagatataaagttagttatatcagctggtagtgacataactaattttatatctaattgtgcatgcgatt |
31693189 |
T |
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| Q |
672 |
gtagaccgaaatttaaaacaatggcattgaatttactctttaggcatagtgtttttcttgctactgaataactttgccaaatttgggataactttctttc |
771 |
Q |
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| T |
31693188 |
gtagaccggaatttaaaacaatgacgttgaatttactctttaggcatagtgtttttcttgctactgaataactttgccaaattcgggataactttctttc |
31693089 |
T |
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| Q |
772 |
tcttcttaagagtgaaaggactaatgtgccgagttgcgggtgaagcagcagacttctgaaacttgattcttttagcaggagtcatacttccatttgattt |
871 |
Q |
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| T |
31693088 |
tcttcttaagagtgaaaggactaatgtgccgagttgcgggtgaagcagcagacttctgaaacttgattcttttagcaggagtcatacttccatttgattt |
31692989 |
T |
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| Q |
872 |
aatactctttctagaaatagctctctgtgccgaactcttctcccgttttct--gtctatcaaact-ctcactactaactct--ctgcagccatcttctct |
966 |
Q |
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| T |
31692988 |
aatactctttctagaaatagctctctgcgacgaacccttttcgcgttttcttgttctatcaaactcctcactactaactcttcttgcagccatcttctct |
31692889 |
T |
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| Q |
967 |
ttgatgt-aacctcctctctcttc-----aaatgttttctttgagttctctttg-actattttt |
1023 |
Q |
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| T |
31692888 |
ttgatgtaaacctcc-ctctcttccttcaaaatgttttctttgagttctctttgaactattttt |
31692826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 10 - 322
Target Start/End: Complemental strand, 31693913 - 31693604
Alignment:
| Q |
10 |
acatgtggtaatc-tatttatttatgcccataaattggaaggatgtatgtttgtttgtcattgcattagatcaacaatttccttgatgaaggagcctcat |
108 |
Q |
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| T |
31693913 |
acatgtggtaatcatgtttatttatgcttataaattggaaggatatatgtttgtttgtcattgcattagatcaacaatttccttgatgaaggagcctcat |
31693814 |
T |
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| Q |
109 |
tgtcgccacttccaggaaatttcttatttatagaacaaatcaaac-nnnnnnnnngctttgaaacaagtaataaagcccttatctgcacatggtacaggt |
207 |
Q |
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| T |
31693813 |
tgtctccacttccacgaaatttctcatttatagaacaaatcaaacaactttttttcctttgaaacaagtaataaagtccttatctgcacatggtatcaat |
31693714 |
T |
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| Q |
208 |
ttttatg--agtgattctcattatctcgtgctaagagatccttgcattctagtaaatggcaccacacatacatcaattatcaatcattttatatagttca |
305 |
Q |
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| T |
31693713 |
ttttatgtaagtggttctcattatctcgtgctaagagtgccttgcattc---taaatggcaccac----acatcaattatcaatcattttatatagttca |
31693621 |
T |
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| Q |
306 |
aaagaatataaggtgta |
322 |
Q |
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| T |
31693620 |
aaagaatataaggtgta |
31693604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 31693526 - 31693471
Alignment:
| Q |
340 |
atacaagtgtagtaagccaattactttttaagctcaaagaagatatgaaactctta |
395 |
Q |
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| T |
31693526 |
atacaagtgtagaaagccaattatttttcaagttaaaagaagatataaaactctta |
31693471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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