View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5682-Insertion-5 (Length: 1040)
Name: NF5682-Insertion-5
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682-Insertion-5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 38342420 - 38342034
Alignment:
| Q |
8 |
gcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38342420 |
gcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttc |
38342321 |
T |
|
| Q |
108 |
ctttcttcaaccttttattagtatcggacgatgaaggcatgatgttacttgttttactaaacccttaaaactgatgagatactatttcagttttgttatg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38342320 |
ctttcttcaaccttttattagtatcggacgatgaaggcatgatgttacttgttttactaaacccttaaaactgatgagagactatttcagttttgttatg |
38342221 |
T |
|
| Q |
208 |
tgatgtgaatagcgtggtttaagtttat--atatgtataggattaacagaatttcagaagatccaggatattagagagtgttttaacctatataaactat |
305 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38342220 |
tgatgtgaatagcgcggtttaagtttatatatatgtataggattaactgaatttcagaagatccaggatattagagagtgttttaacctatataaactat |
38342121 |
T |
|
| Q |
306 |
ataacttatcccattaatattgcaatgcatatcaccaatattgttacttttacgtgtaaactatgatatatagtactaactaactaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38342120 |
ataacttatcccattaatattgcaatgcatatcaccaatattgttacttttacgtgtaaactatgatatatagtactaactaactaa |
38342034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 38446613 - 38446227
Alignment:
| Q |
8 |
gcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38446613 |
gcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttc |
38446514 |
T |
|
| Q |
108 |
ctttcttcaaccttttattagtatcggacgatgaaggcatgatgttacttgttttactaaacccttaaaactgatgagatactatttcagttttgttatg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38446513 |
ctttcttcaaccttttattagtatcggacgatgaaggcatgatgttacttgttttactaaacccttaaaactgatgagagactatttcagttttgttatg |
38446414 |
T |
|
| Q |
208 |
tgatgtgaatagcgtggtttaagtttat--atatgtataggattaacagaatttcagaagatccaggatattagagagtgttttaacctatataaactat |
305 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38446413 |
tgatgtgaatagcgcggtttaagtttatatatatgtataggattaactgaatttcagaagatccaggatattagagagtgttttaacctatataaactat |
38446314 |
T |
|
| Q |
306 |
ataacttatcccattaatattgcaatgcatatcaccaatattgttacttttacgtgtaaactatgatatatagtactaactaactaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38446313 |
ataacttatcccattaatattgcaatgcatatcaccaatattgttacttttacgtgtaaactatgatatatagtactaactaactaa |
38446227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 450 - 965
Target Start/End: Complemental strand, 38341973 - 38341441
Alignment:
| Q |
450 |
cttgaattaactaggattcagtttaaacaattgtagatggaaatttaaaagatgaagttgaagctagctgaatatataagaaagattcagaaataaacaa |
549 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38341973 |
cttgaattaactaggattcactttaaacaattctaaatggaaatttaaaagataaagttgaaactagctgaatatataagaaagattcagaaataaacaa |
38341874 |
T |
|
| Q |
550 |
atgtaaattttttctaatttttcgaactnnnnnnnnnnnncagaaagatcgagtatgaatattcataccgaaaagataaaacttaaattaactagctagg |
649 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||| |
|
|
| T |
38341873 |
atgtaaattttttctaatttttcgaactaaaaaaaaaaaacagaaagatcgagtatgaatattcatacttaaaagatcaaacttatattcactagctagg |
38341774 |
T |
|
| Q |
650 |
a-tctaactaattaattaactagattccagtttttctattggattttgtttatttgattgcaaagttgaagcatatcctt---------ctacttcaaca |
739 |
Q |
| |
|
| ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38341773 |
attctaactaactaattaactagagtccagtttttttattggattttgtttatttgattgcaaagttgaagcatatcctttataccggactacttcaaca |
38341674 |
T |
|
| Q |
740 |
tttgtacaa---nnnnnnnnnnnnnnnnacttcaatccatttcagtaatgttaaattttttaattaaatggaattcaaaatacaatatttatttg-aaga |
835 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38341673 |
tttgtacaatttttttttatttttttttacttcaatccatttaagtaatgttaaattttttaattaaatggaattcaaaatacaatatttatttgaaaga |
38341574 |
T |
|
| Q |
836 |
attaactagaggtgannnnnnnnnnnnnnnnnnnnttacacctaatatttccaaaaacaaaacttcccs--cgaacattcttaccggatcacatc-actt |
932 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
38341573 |
attaactagaggtga--tttttttttttttaaaaattacacctaatatttccaaaaacaaaacttcccgtatgaacattcttaccggatcacatcaactt |
38341476 |
T |
|
| Q |
933 |
-gagtaggattgatcctccc-aactagtagctttt |
965 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
38341475 |
ggagtaggattgatcctcccaaactagtagctttt |
38341441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 450 - 965
Target Start/End: Complemental strand, 38446166 - 38445634
Alignment:
| Q |
450 |
cttgaattaactaggattcagtttaaacaattgtagatggaaatttaaaagatgaagttgaagctagctgaatatataagaaagattcagaaataaacaa |
549 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38446166 |
cttgaattaactaggattcactttaaacaattctaaatggaaatttaaaagataaagttgaaactagctgaatatataagaaagattcagaaataaacaa |
38446067 |
T |
|
| Q |
550 |
atgtaaattttttctaatttttcgaactnnnnnnnnnnnncagaaagatcgagtatgaatattcataccgaaaagataaaacttaaattaactagctagg |
649 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||| |
|
|
| T |
38446066 |
atgtaaattttttctaatttttcgaactaaaaaaaaaaaacagaaagatcgagtatgaatattcatacttaaaagatcaaacttatattcactagctagg |
38445967 |
T |
|
| Q |
650 |
a-tctaactaattaattaactagattccagtttttctattggattttgtttatttgattgcaaagttgaagcatatcctt---------ctacttcaaca |
739 |
Q |
| |
|
| ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38445966 |
attctaactaactaattaactagagtccagtttttttattggattttgtttatttgattgcaaagttgaagcatatcctttataccggactacttcaaca |
38445867 |
T |
|
| Q |
740 |
tttgtacaa---nnnnnnnnnnnnnnnnacttcaatccatttcagtaatgttaaattttttaattaaatggaattcaaaatacaatatttatttg-aaga |
835 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38445866 |
tttgtacaatttttttttatttttttttacttcaatccatttaagtaatgttaaattttttaattaaatggaattcaaaatacaatatttatttgaaaga |
38445767 |
T |
|
| Q |
836 |
attaactagaggtgannnnnnnnnnnnnnnnnnnnttacacctaatatttccaaaaacaaaacttcccs--cgaacattcttaccggatcacatc-actt |
932 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
38445766 |
attaactagaggtga--tttttttttttttaaaaattacacctaatatttccaaaaacaaaacttcccgtatgaacattcttaccggatcacatcaactt |
38445669 |
T |
|
| Q |
933 |
-gagtaggattgatcctccc-aactagtagctttt |
965 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
38445668 |
ggagtaggattgatcctcccaaactagtagctttt |
38445634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 8e-33; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 38447123 - 38447031
Alignment:
| Q |
8 |
gcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38447123 |
gcaagtcctgtgttctttgatacctcgtcccaatttctggttccatgtttttccacatatgcttttaatatttcatcctcttcttttgaccat |
38447031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 38180642 - 38180565
Alignment:
| Q |
23 |
tttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38180642 |
tttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat |
38180565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 38190489 - 38190566
Alignment:
| Q |
23 |
tttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38190489 |
tttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat |
38190566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 38207866 - 38207789
Alignment:
| Q |
23 |
tttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38207866 |
tttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat |
38207789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 38217714 - 38217791
Alignment:
| Q |
23 |
tttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38217714 |
tttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat |
38217791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 38456002 - 38455925
Alignment:
| Q |
23 |
tttgatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38456002 |
tttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat |
38455925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 26033617 - 26033691
Alignment:
| Q |
26 |
gatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat |
100 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26033617 |
gatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccat |
26033691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 53352034 - 53352139
Alignment:
| Q |
35 |
ttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccataatgttcctttcttcaaccttttattagtatcgg |
134 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||| ||||||| ||| |||||||| | |
|
|
| T |
53352034 |
ttccaatttctggttccatgtttttccacatatgcttttaacatttcatcctcttcttttgacc---attttccttttttcaaccctttgttagtatccg |
53352130 |
T |
|
| Q |
135 |
acgatgaag |
143 |
Q |
| |
|
| ||||||| |
|
|
| T |
53352131 |
atgatgaag |
53352139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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