View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5682-Insertion-6 (Length: 1016)
Name: NF5682-Insertion-6
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682-Insertion-6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 2372879 - 2372621
Alignment:
| Q |
8 |
catttaaaggcgatgtgagatttaaccacccacacttacaatccaaaagatcaaatacattatgtagtcattgatgttagatgtttgtaacatgctattt |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2372879 |
catttaaagacgatgtgagatttaaccacccacacttacaatccaaaagatcaaatacattatgtagtcattgatgttagatgtttgtaacatgctattt |
2372780 |
T |
|
| Q |
108 |
ctttgaannnnnnnngttaggaattagtctttcaagtcaaacaatgttgacgctgttgcacattttcatacaactccacaaaaagtgttcatgtgatcat |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2372779 |
ctttgaaatttttttgttaggaattagtctttcaagtcaaacaatgttgacgctgttgcacattttcatacaacttcacaaaaagtgttcatgtgatcat |
2372680 |
T |
|
| Q |
208 |
ttaataccgaggtggtaggtccaaatcaacaaattatatttttatatttaacttctatt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2372679 |
ttaataccgaggtggtaggtccaaatcaacaaattatatttttatatttaacttctatt |
2372621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 484 - 658
Target Start/End: Complemental strand, 2372404 - 2372228
Alignment:
| Q |
484 |
aaataaaaagatattatgttgaattgaccataattatttattttctttaggaccaacattataccattcgataaagtaaagtatc--aattcatnnnnnn |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| | | ||| |
|
|
| T |
2372404 |
aaataaaaagatattatgttgaattgaccataattatttattttctttacgaccaacattatactattagataaagtaaagtatcttagtgcataaaaaa |
2372305 |
T |
|
| Q |
582 |
ntataaagtaaagtattacaatggtttgaattagctttttataaatatgcttaaaattttataaactttgaatgtac |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2372304 |
atataaagtaaagtattacaatggtttgaattagctttttataaatatgcttaaaattttataaactttgaatgtac |
2372228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 328 - 413
Target Start/End: Complemental strand, 2372559 - 2372474
Alignment:
| Q |
328 |
tgtgaatttcacattcaaaccaaaatctaaagtgtttgtagagaagaaatcaaagtaagagagggggatccacttttaagtgttcg |
413 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2372559 |
tgtgaatttcacattcaaaccaagatctaaagtgtttgtagagaagaaatcaaaataagagagggggatccacttttaagtgttcg |
2372474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 759 - 805
Target Start/End: Complemental strand, 2372129 - 2372083
Alignment:
| Q |
759 |
atttcagttattcttctgttttatatgtcacaaatacattgaccatc |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2372129 |
atttcagttattcttctgttttatatgtcacaaatacattgaccatc |
2372083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 932 - 983
Target Start/End: Complemental strand, 2371957 - 2371904
Alignment:
| Q |
932 |
ataggagggtaactttttag-ttaaagaaattatt-aattttgagaatccgata |
983 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
2371957 |
ataggagggtaactttttagtttaaagaaattattaaattttgagaatccgata |
2371904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 932 - 983
Target Start/End: Complemental strand, 13447006 - 13446953
Alignment:
| Q |
932 |
ataggagggtaactttttagtt-aaagaaattattaa-ttttgagaatccgata |
983 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
13447006 |
ataggaaggtaactttttagtttaaagaaattattaaattttgagaatccgata |
13446953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University