View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5682-Insertion-8 (Length: 705)
Name: NF5682-Insertion-8
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682-Insertion-8 |
 | |
|
| [»] scaffold0069 (2 HSPs) |
| | |
|
| [»] scaffold0006 (9 HSPs) |
| | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
| [»] scaffold0406 (2 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 15899341 - 15899637
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| ||||| |||||||||| |
|
|
| T |
15899341 |
aattaccatacctcttttactgcattatttctatcttctttaactattatctcctccatcatagaacaattacttatttcaaggtgtttaaggttcataa |
15899440 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| ||| |
|
|
| T |
15899441 |
aactttcaaccaaagtagaggagaataaatacttcaatccaacacaattatccacaatcaagcaagtcaagttgcacatagattgatgattatcatgcca |
15899540 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattactgaag |
302 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||| | || ||||||||||||||| |
|
|
| T |
15899541 |
aacttgattcaaattgagaagtgagctcaatttaagggtatccaaattcggaaactcaacctacataaaaccaaacaaacagaaatcattactgaag |
15899637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 13670462 - 13670170
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| | ||| ||||||||||||| ||||| | |||||| |||| || |
|
|
| T |
13670462 |
aattaccatacctcttttactgcattatttctatcttctttagttattatatcctccattataagacaattacttatctcaaggtatttgagattcaaaa |
13670363 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | ||||||| |
|
|
| T |
13670362 |
aactttcaaccaaagtagagggaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgacatccca |
13670263 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattact |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
13670262 |
aattttattcaaattgagaagtgagctcaatttaagggtatccaaattaggaaatgcgacctacataaaaacaaattagcagaaatcattact |
13670170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 20477427 - 20477135
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20477427 |
aattaccatacctcttttactgcattatttctatcttctttagttattatatcctccatgataggacaattacttatttcaagatgtttgaggttcataa |
20477328 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
20477327 |
aactttcaaccaaagtagaggagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattctcatccca |
20477228 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattact |
298 |
Q |
| |
|
| || |||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||| || || ||||||||||| |
|
|
| T |
20477227 |
gactttgttcaaattgagaagtgagcttaatttaagggtatccaaattaggaaatgaaacctacataaaaacaaattaacagaaatcattact |
20477135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 20368355 - 20368063
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20368355 |
aattaccatacctcttttactgcattatttctatcttctttagtgattatatcctccatgataggacaattacttatttcaagatgtttgaggttcataa |
20368256 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
20368255 |
aactttcaaccaaagtagaggagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattctcatccca |
20368156 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattact |
298 |
Q |
| |
|
| || |||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||| || || ||||||||||| |
|
|
| T |
20368155 |
gactttgttcaaattgagaagtgagcttaatttaagggtatccaaattaggaaatgaaacctacataaaaacaaattaacagaaatcattact |
20368063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 13655073 - 13654820
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13655073 |
aattaccatacctcttttaatgcattatttctctcctttttagctattatctcctccatcataggacaattacttatttcaaggtgtttgaggttcataa |
13654974 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
13654973 |
aacttttaaccaaagtagagggaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgatgattgtcatccca |
13654874 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaa |
259 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
13654873 |
gactttattcaaattgagaagtgagctcaatttaagggtatccaaactaggaaa |
13654820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 13684717 - 13684421
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
||||| || |||||||| | |||||| |||| || | ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
13684717 |
aattagcatacctctttcagtgcattgtttcagtcatttttagctattatctcctccatcatatgacagttacttatttcaaggtgtttgaggttcataa |
13684618 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
13684617 |
aactttcaaccaaagaagaagaaaataaatacttcaatccaacacaattatccacaaacaagctagtcaagttgcacattgattgatgattgtcatccca |
13684518 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattactgaag |
302 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| || || ||||||||||||||| |
|
|
| T |
13684517 |
aaattaattcaaattgagaagtgagctcaatttaagggtatccaaattaggaaatgcaacctacataaaaacaaattaacagaaatcattactgaag |
13684421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 13543289 - 13543021
Alignment:
| Q |
9 |
ttaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataaaa |
107 |
Q |
| |
|
|||||| || ||||| | |||||| ||||| |||||||||||||| |||||| || ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13543289 |
ttaccatacatctttcaatgcattgtttctgtcttctttagctataatctccaccatcataggacaattacttatttcaaggtgtttgaggttcataaaa |
13543190 |
T |
|
| Q |
108 |
ctttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatcccaaa |
207 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
13543189 |
ctttcaaccaaagaagatgagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgtcatcccaaa |
13543090 |
T |
|
| Q |
208 |
tttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaa |
276 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
13543089 |
tttgatttaaattgagaagtgaactcaatttaagggtatccaaacatggaaactcaacctacataaaaa |
13543021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 19138459 - 19138733
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
||||| || |||||||| | |||||| ||||| |||| ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
19138459 |
aattagcatacctctttcagtgcattgtttctgtcttttttagctattatctcctccatcatatgacagttacttatttcaaggtgtttgaggttcataa |
19138558 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
19138559 |
aactttcaaccaaagtagagggaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgtcatccca |
19138658 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaa |
280 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
19138659 |
gactttattcaaattgagaagtgagctcaatttaagggtatccaaattaggaaatgcaacctacgtaaaaacaaa |
19138733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 13506205 - 13505952
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
||||| || |||||||| | |||||| ||||| |||| ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
13506205 |
aattagcatacctctttcagtgcattgtttctgtcttttttagctattatctcctccatcatatgacagttacttatttcaaggtgtttgaggttcataa |
13506106 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
13506105 |
aactttcaaccaaagtagagggaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgatgattgtcatccca |
13506006 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaa |
259 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13506005 |
gactttattcaaattgagaagtgagctcaatttaagggtatccaaattaggaaa |
13505952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 13649964 - 13649690
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
||||| || |||||||| | |||||| ||||| |||| ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
13649964 |
aattatcatacctctttcaatgcattgtttctgtcttttttagctattatctcctccatcatatgacagttacttatttcaaggtgtttgaggttcataa |
13649865 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
13649864 |
aactttcaaccaaagtagagggaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgtcatccca |
13649765 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaa |
280 |
Q |
| |
|
| || ||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
13649764 |
gactttattcaaattgagaagtgagctaaatttaagggtatccaaattaggaaatacaacctacgtaaaaacaaa |
13649690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 13420817 - 13420547
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
13420817 |
aattaccatacctcttccactgcattatttctatcttcttcagctattatctcctccatcataggacaattagttatttcaaggtgtttgaggttcataa |
13420718 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
|||||||||| || | ||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
13420717 |
aactttcaacaaacgaagaagagaataaatacttcaatccattgcaattatccacaatcaagctagtcaagttgcacatagattgatgattgtcatccca |
13420618 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaa |
276 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||| |||||| |
|
|
| T |
13420617 |
aactttattcaaattgagaagtgagctcaatttaagggtatccaaaataggaaatgcaacctacgtaaaaa |
13420547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 13610273 - 13609999
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
||||| || |||||||| | |||||| ||||| || | ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
13610273 |
aattagcatacctctttcagtgcattgtttctgtcctttttagctattatctcctccatcatatgacagttacttatttcaaggtgtttgaggttcataa |
13610174 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
13610173 |
aactttcaaccaaagaagagggaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgtcatccca |
13610074 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaa |
280 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
13610073 |
gactttattcaaattgagaagtgagctcaatttaagggtatccaaattaggaaatgcaacctacgtaaaaacaaa |
13609999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 16468662 - 16468910
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||||||| | ||||| || | ||||||||||| |||||||| ||| ||| ||||||||||| |||||||| |||| |||||| ||| |
|
|
| T |
16468662 |
aattaccatacctctttcaatgcatcgcttatctcttctttagcaattatctcttccatcaacggacaattactaatttcaaggtgttgaaggttcttaa |
16468761 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||| |||||| |||||| || ||||| |||||||| || |||| || |||||||||||| ||||||||||| ||||||| | || | ||||||||| |
|
|
| T |
16468762 |
aacttccaaccacagtagacgagaataagtacttcaacgcaccacacttctccacaatcaaggtagtcaagttgtacatagaataatgactgtcatccca |
16468861 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaatta |
254 |
Q |
| |
|
||||| |||||||||| | ||||||||||||||||| || || |||||| |
|
|
| T |
16468862 |
aattttattcaaattgcggagtgagctcaatttaagggtctctaaatta |
16468910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 481 - 539
Target Start/End: Complemental strand, 13684170 - 13684112
Alignment:
| Q |
481 |
actaacttttaacattgaaaatcttgagcaagatgtaattattattattcttatcattt |
539 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
13684170 |
actaacttttaactttgaaaatcttgagcaagatgtaattgttaatattcttatcattt |
13684112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 520
Target Start/End: Complemental strand, 13542818 - 13542777
Alignment:
| Q |
479 |
aaactaacttttaacattgaaaatcttgagcaagatgtaatt |
520 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13542818 |
aaactaacttttaactttgaaaatcttgagcaagatgtaatt |
13542777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 13670152 - 13670107
Alignment:
| Q |
396 |
tgaaacaacgtataactaatagtttaattaaaaagtaacaactatg |
441 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
13670152 |
tgaaacaacgtataactaatagtataattaaaaagtaaaaactatg |
13670107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 536
Target Start/End: Original strand, 15899813 - 15899870
Alignment:
| Q |
479 |
aaactaacttttaacattgaaaatcttgagcaagatgtaattattattattcttatca |
536 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
15899813 |
aaactaacttttaacattgcaaatcttgagcaagatgtaatcgttattacttttatca |
15899870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 298
Target Start/End: Original strand, 38057986 - 38058278
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38057986 |
aattaccatacctctttcaatgcattatttctgtcttttttagctattatctcctccatcataggacaattacttatttcaaggtgtttgaggttcataa |
38058085 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
38058086 |
aactttcaaccaaagtagaggggaataaatacttcaatccaacacaattatcgacaatcaagctagtcaagttgcacatagattgatgattgtcatccca |
38058185 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattact |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||| || || ||||||||||| |
|
|
| T |
38058186 |
aatttgattcaaattgagaagtgagctcaatttaagggtgtccaaattaggaaatgcaacctacataaaaacaaattaacagaaatcattact |
38058278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 26349 - 26066
Alignment:
| Q |
16 |
acctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataaaactttcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26349 |
acctcttttactgcattatttctatcttctttagttattatatcctccatgataggacaattacttatttcaagatgtttgaggttcataaaactttcaa |
26250 |
T |
|
| Q |
115 |
ccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatcccaaatttgatt |
214 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||| |
|
|
| T |
26249 |
ccaaagaagaggagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgtcatcccaaattttatt |
26150 |
T |
|
| Q |
215 |
caaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattact |
298 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||| || || ||||||||||| |
|
|
| T |
26149 |
caaattgagaagtgatctcaatttaagggtaagcaaattaggaaactcaacctacataaaaacaaattaacagaaatcattact |
26066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 26048 - 26003
Alignment:
| Q |
396 |
tgaaacaacgtataactaatagtttaattaaaaagtaacaactatg |
441 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
26048 |
tgaaacaacgtataactaatagtataattaaaaagtaaaaactatg |
26003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 193; Significance: 1e-104; HSPs: 9)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 56887 - 56595
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||||||| | |||||| ||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
56887 |
aattaccatacctctttcaatgcattgtttctgtcttctttagctataatctcttccatcataggacaattacttatttcaaggtgtttgaggttcataa |
56788 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
56787 |
aactttcaaccaaagtagagagaaataaatacttcaatccaacacaataatccacaatcaagctagtcaagttgcacattgattgatgattgtcatccca |
56688 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattact |
298 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| | || ||||||||||| |
|
|
| T |
56687 |
tattttattcaaattgagaagtgagctcaatttaagggtatccaaattaggaaactcaacctacataaaaacaaatcaacagaaatcattact |
56595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 168076 - 167784
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| | ||| ||||||||||||| ||||| | |||||| |||| || |
|
|
| T |
168076 |
aattaccatacctcttttactgcattatttctatcttctttagttattatatcctccattataagacaattacttatctcaaggtatttgagattcaaaa |
167977 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | ||||||| |
|
|
| T |
167976 |
aactttcaaccaaagtagagggaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgacatccca |
167877 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattact |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
167876 |
aattttattcaaattgagaagtgagctcaatttaagggtatccaaattaggaaatgcgacctacataaaaacaaattagcagaaatcattact |
167784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 144834 - 144581
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
144834 |
aattaccatacctcttttaatgcattatttctctcctttttagctattatctcctccatcataggacaattacttatttcaaggtgtttgaggttcataa |
144735 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
144734 |
aacttttaaccaaagtagagggaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgatgattgtcatccca |
144635 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaa |
259 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
144634 |
gactttattcaaattgagaagtgagctcaatttaagggtatccaaactaggaaa |
144581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 139756 - 139482
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
||||| || |||||||| | |||||| ||||| |||| ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
139756 |
aattagcatacctctttcagtgcattgtttctgtcttttttagctattatctcctccatcatatgacagttacttatttcaaggtgtttgaggttcataa |
139657 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
139656 |
aactttcaaccaaagtagagggaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgtcatccca |
139557 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaa |
280 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
139556 |
gactttattcaaattgagaagtgagctcaatttaagggtatccaaattaggaaatgcaacctacgtaaaaacaaa |
139482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 45 - 302
Target Start/End: Complemental strand, 109797 - 109539
Alignment:
| Q |
45 |
tttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataaaactttcaaccaaagtagatgaaaataaatacttcaat |
143 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
109797 |
tttagctattatctcctccatcatatgacaattacttatttcaaggtgtctgaggttcataaaactttcaaccaaagaagatgagaataaatacttcaat |
109698 |
T |
|
| Q |
144 |
ccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatcccaaatttgattcaaattgagaagtgagctcaatttaagag |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| | || ||||||||||||||||||||||||||||| | |
|
|
| T |
109697 |
ccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattctcatcccagactttgttcaaattgagaagtgagctcaatttaaggg |
109598 |
T |
|
| Q |
244 |
tatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattactgaag |
302 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||||| || || ||||||||||||||| |
|
|
| T |
109597 |
tatccaaattagaaaatgcaacctacataaaaacaaattaacagaaatcattactgaag |
109539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #6
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 99 - 298
Target Start/End: Complemental strand, 205706 - 205507
Alignment:
| Q |
99 |
ttcataaaactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggt |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || |
|
|
| T |
205706 |
ttcataaaactttcaaccaaagaagatgagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgt |
205607 |
T |
|
| Q |
199 |
catcccaaatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattact |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
205606 |
catcccaaatttgattcaaattgagaagtgagctcaatttaagggtatccaaattaggaaatgcaacctacataaaaacaaattagcagaaatcattact |
205507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #7
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 218675 - 218445
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
||||| || |||||||| | |||||| |||| || | ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
218675 |
aattatcatacctctttcagtgcattgtttccgtcatttttagctattatctcctccatcatatgacagttacttatttcaaggtgtttgaggttcataa |
218576 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
218575 |
aactttcaaccaaagaagatgagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgtcatccca |
218476 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
218475 |
aatttgattcaaattgagaagtgagctcaat |
218445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 481 - 539
Target Start/End: Complemental strand, 109018 - 108960
Alignment:
| Q |
481 |
actaacttttaacattgaaaatcttgagcaagatgtaattattattattcttatcattt |
539 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
109018 |
actaacttttaactttgaaaatcttgagcaagatgtaattgttaatattcttatcattt |
108960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 167766 - 167721
Alignment:
| Q |
396 |
tgaaacaacgtataactaatagtttaattaaaaagtaacaactatg |
441 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
167766 |
tgaaacaacgtataactaatagtataattaaaaagtaaaaactatg |
167721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 21814341 - 21814075
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||| ||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21814341 |
aattaccatacctattttactgcattatttctctctgttttagctataatctcctccatgataggacaattacttatttcaagatgtttgaggttcataa |
21814242 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
21814241 |
aactttcaaccaaagtagaggagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgataattgtcatccca |
21814142 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacata |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||| |
|
|
| T |
21814141 |
aatttgattcaaattgagaagtgagctcaatttaagggcatccaaattaggaaatgcaacctacata |
21814075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 22284217 - 22284482
Alignment:
| Q |
16 |
acctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataaaactttcaa |
114 |
Q |
| |
|
|||||||| | |||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22284217 |
acctctttcaatgcattgtttctgtcttttttagctattatctcctccatcataggacaattacttatttcaaggtgtttgaggttcataaaactttcaa |
22284316 |
T |
|
| Q |
115 |
ccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatcccaaatttgatt |
214 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| || ||||||||||| |||||| |
|
|
| T |
22284317 |
ccaaagtagagggaaataaatacttcaatccaacacaattatcgacaatcaagttagtcaagttgtacatagattgatgattgtcatcccaaacttgatt |
22284416 |
T |
|
| Q |
215 |
caaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaa |
280 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| |||||||| ||| |||| |||||||||| |
|
|
| T |
22284417 |
caaattgagaattgagctcaatttaacggtatccaatttaggaaatgcaacctacgtaaaaacaaa |
22284482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 115673 - 115381
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
115673 |
aattaccatacctcttttactgcattatttctatcttctttagttattatatcctccatgataggacaattacttatttcaagatgtttgaggttcataa |
115574 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
115573 |
aactttcaaccaaagtagaggagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattctcatccca |
115474 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattact |
298 |
Q |
| |
|
| || |||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||| || || ||||||||||| |
|
|
| T |
115473 |
gactttgttcaaattgagaagtgagcttaatttaagggtatccaaattaggaaatgaaacctacataaaaacaaattaacagaaatcattact |
115381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 107867 - 107601
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
||||| || |||||||||| |||||| ||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
107867 |
aattatcatacctcttttattgcattttttctttcttttttagctattatctcctccatcatttgacaattacttatttcaaggtgtttgaggttcataa |
107768 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
107767 |
aactttcaaccaaagaagatgagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattttcatccca |
107668 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacata |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||| |
|
|
| T |
107667 |
aatttgattcaaattgagaagtgagctcaatttaagggcatccaaattaggaaatgcaacctacata |
107601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 181; Significance: 2e-97; HSPs: 2)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 7971 - 8267
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
||||| || |||||||| | |||||| |||| || | ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
7971 |
aattatcatacctctttcagtgcattgtttccgtcatttttagctattatctcctccatcatatgacagttacttatttcaaggtgtttgaggttcataa |
8070 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
8071 |
aactttcaaccaaagaagaggagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattgtcatccca |
8170 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattactgaag |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| | ||||||||||||||| ||| ||||||||||||||| || || ||||||||||||||| |
|
|
| T |
8171 |
aatttgattcaaattgagaagtgagctcaatgtaagggcatccaaattaggaaatgcaacctacataaaaacaaattaacagaaatcattactgaag |
8267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 481 - 539
Target Start/End: Original strand, 8788 - 8846
Alignment:
| Q |
481 |
actaacttttaacattgaaaatcttgagcaagatgtaattattattattcttatcattt |
539 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
8788 |
actaacttttaactttgaaaatcttgagcaagatgtaattgttaatattcttatcattt |
8846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 41141 - 41433
Alignment:
| Q |
11 |
accacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataaaact |
109 |
Q |
| |
|
|||| |||||||| | ||||| ||||| || | |||||||||||| |||||| ||||| |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
41141 |
accatacctctttcaatgcatggtttctctcctttttagctattatttcctccatcatatgacagttacttatttcaaggtgtttgaggttcataaaact |
41240 |
T |
|
| Q |
110 |
ttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatcccaaatt |
209 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
41241 |
ttcaaccaaagtagagggaaataaatacttcaatccaacacatttatcgacaatcaagctagtcaagttgcacatagattgatgattgtcatcccaaatt |
41340 |
T |
|
| Q |
210 |
tgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattactgaag |
302 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||| || || ||||| ||||||||| |
|
|
| T |
41341 |
tgatttaaattgagaagtgaactcaatttaagggtatccaaatatggaaactcaacctacataaaaacaaattaacagaaatccttactgaag |
41433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 7 - 298
Target Start/End: Original strand, 20814967 - 20815259
Alignment:
| Q |
7 |
aattaccacacctcttttactgcattatttctatcttctttagctattatctcctcc-tcataggacaattacttatttcaagttgtttgaggttcataa |
105 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||| ||| ||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20814967 |
aattaccataccttttttcctgcattatttctctctgttttagctataatctcctccatgataggacaattacttatttcaagatgtttgaggttcataa |
20815066 |
T |
|
| Q |
106 |
aactttcaaccaaagtagatgaaaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacatagattgataatggtcatccca |
205 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
20815067 |
aactttcaaccaaagtagaggagaataaatacttcaatccaacacaattatccacaatcaagctagtcaagttgcacattgattgatgattctcatccca |
20815166 |
T |
|
| Q |
206 |
aatttgattcaaattgagaagtgagctcaatttaagagtatccaaattaggaaactcaatctacataaaaacaaactagcataaatcattact |
298 |
Q |
| |
|
| || |||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||| || || ||||||||||| |
|
|
| T |
20815167 |
gactttgttcaaattgagaagtgagcttaatttaagggtatccaaattaggaaatgaaacctacataaaaacaaattaacagaaatcattact |
20815259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 590
Target Start/End: Complemental strand, 16964847 - 16964810
Alignment:
| Q |
553 |
ttttaaaaagttgcgattttggcacctaacaaataaaa |
590 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
16964847 |
ttttaaaaagttgcgattttggcccctaacaaaaaaaa |
16964810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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