View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682-Insertion-9 (Length: 541)
Name: NF5682-Insertion-9
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682-Insertion-9 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Complemental strand, 41805946 - 41805406
Alignment:
| Q |
8 |
caaagacgggtaagaactggaaaattttgatagtgggacatgttaacccaacgttctatactgaacaaaacaataagacgtcactaagattattcaattc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805946 |
caaagacgggtaagaactggaaaattttgatagtgggacatgttaacccagcgttctatactgaacaaaacaataagacgtcactaagattattcaattc |
41805847 |
T |
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| Q |
108 |
aaattcaagagaagaacagaactaactttg------atacagggnnnnnnntataactatacacatactcatgtttgtcaaatcacgacagtacctaatt |
201 |
Q |
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| T |
41805846 |
aaattcaagagaagaacagaactaactttgctactgatacagggaaaaaaatataactatacacatactcatgtttgtcaaatcacgacagtacctaatt |
41805747 |
T |
|
| Q |
202 |
ggacaaagttgcatnnnnnnnntatagatgggttcacattgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctg |
301 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805746 |
ggacaaagttgcataaaaaaaatatagatgggttcacactgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctg |
41805647 |
T |
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| Q |
302 |
tgataatcaatccgcaaacaaagctgcctgatggcctccctcttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagct |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805646 |
tgataatcaatccgcaaacaaagctgcctgatggcctccctcttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagct |
41805547 |
T |
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| Q |
402 |
cttcaactcacttcttaagttcaacaacaattgttgtcacattcatcttctctga-ttccccctttcttgcctttgcctctagcttttcaaccttttccc |
500 |
Q |
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| T |
41805546 |
cttcaactctcttcttaagttcaacaacaattgttgtcacattcatcttctctgatttccccctttcttgcctttgcctctagcttttcaaccttttccc |
41805447 |
T |
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| Q |
501 |
tcagagttaattcctcttcccttttaccctgcagctcctcc |
541 |
Q |
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| T |
41805446 |
tcagagttaattcctcttcccttttaccctgcagctcctcc |
41805406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 241 - 540
Target Start/End: Complemental strand, 41799321 - 41799022
Alignment:
| Q |
241 |
tgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctcc |
340 |
Q |
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| T |
41799321 |
tgctctctggcccctgcgtgtctttgatatgatttccttgagacggtcactactctcacggtgataatcaatccacaaacagagctgcctgatggcctcc |
41799222 |
T |
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| Q |
341 |
ctcttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactcacttcttaagttcaacaacaattgttgtca |
440 |
Q |
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| T |
41799221 |
ctcttttcctctcccaaatccaatatgccttcctctttctctttcatcgacttctctagctctccaactgtcttcttaagttcaacaacagttgctgtca |
41799122 |
T |
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| Q |
441 |
cattcatcttctctgattccccctttcttgcctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccctgcagctcctc |
540 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
41799121 |
cattcatcttctctgattcctcctttcttgccttcacctctagcttctcaaccttttccctcagagttaattccccttcctttttaccctgcagttcctc |
41799022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 243 - 541
Target Start/End: Complemental strand, 41812535 - 41812237
Alignment:
| Q |
243 |
ctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctccct |
342 |
Q |
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|||||||||||| |||||||||| |||| | |||| |||||| |||| | ||| | ||||||||||||| |||||| |||||||||||||||||||| |
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| T |
41812535 |
ctctctggcccctttgagtctttgagatgattcccttgagatagacattacactcgcggtgataatcaatcaacaaacagagctgcctgatggcctccct |
41812436 |
T |
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| Q |
343 |
cttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactcacttcttaagttcaacaacaattgttgtcaca |
442 |
Q |
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| T |
41812435 |
cttttcctctcccaaatccaatattccttcctctttctcttttatcaacttctgtagctcttcaactgtcttcttaagttcatcaacagttgctgtcaca |
41812336 |
T |
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| Q |
443 |
ttcatcttctctgattccccctttcttgcctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccctgcagctcctcc |
541 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| || | ||||||| || |||||||| |||||||||||| ||||||| |
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| T |
41812335 |
ttcatcttctctgattcctcctttcttgcctttgcctctagcttttcaacctctttctgcagagttgatccctcttcctttttaccctgcaactcctcc |
41812237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 41799614 - 41799488
Alignment:
| Q |
8 |
caaagacgggtaagaactggaaaattttgatagtgggacatgttaacccaacgttctatactgaacaaaacaataagacgtcactaagattattcaattc |
107 |
Q |
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|||||||||||||||| ||| ||| ||| ||| ||||||||||| | |||| || ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41799614 |
caaagacgggtaagaattggcaaaatttaataatgggacatgttcatccaaatttgtatactgaacaaaacaataagacctcactaagattattcaattc |
41799515 |
T |
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| Q |
108 |
aaattcaagagaagaacagaactaact |
134 |
Q |
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| T |
41799514 |
aaattcaagagaagaacaggactaact |
41799488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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