View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682_high_12 (Length: 332)
Name: NF5682_high_12
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 41129939 - 41130245
Alignment:
| Q |
11 |
cacagactacaatacatccaatcaagaacatgtagttgatctctggaatataaacttgaccttcatgcttagctgaagtatgaacaaccttgactctagg |
110 |
Q |
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| T |
41129939 |
cacaaactacaatacatccaatcaagaacatgtagttgatctctggaatataaacttgaccttcatggttagctgaagtatgaacaaccttgactctagg |
41130038 |
T |
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| Q |
111 |
gaaacaacctagactaagggcttgtgatataatggaaaatgctcctgaaatcattgcctgactagctataatggcagcaccaatagccacaacaaatgtt |
210 |
Q |
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| T |
41130039 |
gaaacaacctaaactaagggcttgtgatataatggaaaatgctcctgaaatcattgcctgactagctataatggcagcaccaatagccacaacaaatgtt |
41130138 |
T |
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| Q |
211 |
ggccaatacaagggatctgcatgttattcacatttattaataataatgtgcgtatgatttctcttaaatattaatcaactaattaataataattacctgg |
310 |
Q |
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| T |
41130139 |
ggccaatacaagggatctgcatgttattcacatttaataataataatgtgggtatgatttctcttaaaaattaatcaactaattaataataattacctgg |
41130238 |
T |
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| Q |
311 |
tatactt |
317 |
Q |
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| T |
41130239 |
tatactt |
41130245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 46 - 221
Target Start/End: Complemental strand, 7801091 - 7800916
Alignment:
| Q |
46 |
ttgatctctggaatataaacttgaccttcatgcttagctgaagtatgaacaaccttgactctagggaaacaacctagactaagggcttgtgatataatgg |
145 |
Q |
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| T |
7801091 |
ttgatttcaggaatataaacttggccttgatgtttggtagaagtgtgcacaaccttaacccttgggaaacaacccatacttaaagcttgagatataatgg |
7800992 |
T |
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| Q |
146 |
aaaatgctcctgaaatcattgcctgactagctataatggcagcaccaatagccacaacaaatgttggccaatacaa |
221 |
Q |
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| T |
7800991 |
aaaatgctgcggaaactattgcttggctagctatgatggaagcaacaaccgcaacaacaaatgttggccaatacaa |
7800916 |
T |
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