View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682_high_15 (Length: 295)
Name: NF5682_high_15
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682_high_15 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0521 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 26840474 - 26840768
Alignment:
| Q |
1 |
tttccctcccaaatcttaacattaactccttctaagtgtaattcctaatcaacattccactttctaattcaattccctattcccaaagttgttcaagagt |
100 |
Q |
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| T |
26840474 |
tttccctcccaaatcttaacattaactccttctaagtgtaattcctaatcaacattccactttctaattcaattccctattcccaaagttgttcaagagt |
26840573 |
T |
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| Q |
101 |
tgtattgtaaatgaaacatgtgattaccgatgcatatccctattctcaattcattctccaattcgaacactctgataccacttaatcatcggttaccttt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||| |
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| T |
26840574 |
tgtattgtatatgaaacatgtgattaccgatgcatatccctattctcaattcattctccaattcgaacacactgataccactttatcatcagtttccttt |
26840673 |
T |
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| Q |
201 |
tcatttatgtcatccgcgcagcgaccgatgatgactcgccggcgacgacacctacgacaccgccctcctctgtcaccaccaaatacaattccgtc |
295 |
Q |
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| T |
26840674 |
tcatttcctccctcctctcatcgaccgaacatgactcgccggcgacaacacctacatctcctctctcctctgtcaccaccaaatacaactccgtc |
26840768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 26840048 - 26840335
Alignment:
| Q |
1 |
tttccctcccaaatcttaacattaactccttctaagtgtaattcctaatcaacattccactttctaattcaattccctattcccaaagttgttcaagagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26840048 |
tttccctcccaaatcttaacattaactccttctaagtgtaattcctaatcaacattccactttctaattcaattccctattcccaaagttgttcaaaagt |
26840147 |
T |
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| Q |
101 |
tgtattgtaaatgaaacatgtgattaccgatgcatatccctattctcaattcattctccaattcgaacactctgataccacttaatcatcggttaccttt |
200 |
Q |
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| T |
26840148 |
tgt-------atgaaacatgtgattaccgatgcatatccctattctcaattcattctccaattcgaacacactgataccacttcatcatcagtttccttt |
26840240 |
T |
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| Q |
201 |
tcatttatgtcatccgcgcagcgaccgatgatgactcgccggcgacgacacctacgacaccgccctcctctgtcaccaccaaatacaattccgtc |
295 |
Q |
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| T |
26840241 |
tcatttcctccctcctctcatcgaccgaacatgactcgccggcgacaacacctacatctcctctttcctctgtcaccaccaaatacaactccgtc |
26840335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 21922394 - 21922528
Alignment:
| Q |
1 |
tttccctcccaaatcttaacattaactccttctaagtgtaattcctaatcaacattccactttctaattcaattccctattcccaaagttgttcaagagt |
100 |
Q |
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||||||||| ||||||| |||||||| |||||||| |||||||||||| ||||||||||| ||||||| ||| | ||||||||||||||||||||| |
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| T |
21922394 |
tttccctccttaatcttagcattaact---tctaagtgcaattcctaatcagcattccactttggaattcaaatccttgttcccaaagttgttcaagagt |
21922490 |
T |
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| Q |
101 |
tgtattgtaaatgaaacatgtgattaccgatgcatatc |
138 |
Q |
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| T |
21922491 |
tgtattgtaaatgaaacatgtgattaccgatgcatatc |
21922528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 14456300 - 14456257
Alignment:
| Q |
20 |
cattaactccttctaagtgtaattcctaatcaacattccacttt |
63 |
Q |
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| T |
14456300 |
cattaaatccttctaagtggtattcctaatcaacattccacttt |
14456257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0521 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0521
Description:
Target: scaffold0521; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 5238 - 5201
Alignment:
| Q |
127 |
ccgatgcatatccctattctcaattcattctccaattc |
164 |
Q |
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| T |
5238 |
ccgatacatatccctattctcaattcattctccaattc |
5201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 18291093 - 18291056
Alignment:
| Q |
127 |
ccgatgcatatccctattctcaattcattctccaattc |
164 |
Q |
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| T |
18291093 |
ccgatacatatccctattctcaattcattctccaattc |
18291056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 15291539 - 15291582
Alignment:
| Q |
20 |
cattaactccttctaagtgtaattcctaatcaacattccacttt |
63 |
Q |
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| T |
15291539 |
cattaactccttctaagtgctaatcctaatcaacattccacttt |
15291582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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