View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5682_high_17 (Length: 265)
Name: NF5682_high_17
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 5272839 - 5273082
Alignment:
| Q |
7 |
tccaagaatattttcatatatcctcgcatcaaataattgattgtataactctatgatgtgatgaaagcaaaataattcatgcatacacatcttaatctac |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5272839 |
tccaacaatattttcatatatcctcgcatcaaataattgattgtataactctatgatgtgatgaaagcaaaataattcatgcatacacatcttaatctac |
5272938 |
T |
|
| Q |
107 |
ctgcattcctttaatcatataataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcct-nnnnnnnnnctaatta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5272939 |
ctgcattcctttaatcatataataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcctaaaagaaaaactaatta |
5273038 |
T |
|
| Q |
206 |
atcagaattatcatataatgcactagcctagtttacctttctat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273039 |
atcagaattatcatataatgcactagcctagtttacctttctat |
5273082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 5268598 - 5268643
Alignment:
| Q |
34 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
79 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
5268598 |
atcaaataattgatagttgaactctatgatgtgatgaaagcaaaat |
5268643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 31152919 - 31152874
Alignment:
| Q |
34 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
79 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
31152919 |
atcaaataattgatagtttaactctgtgatgtgatgaaagcaaaat |
31152874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 34286235 - 34286190
Alignment:
| Q |
34 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
79 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
34286235 |
atcaaataattgatagtttaactctatgatgtgatgaaatcaaaat |
34286190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University