View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682_high_20 (Length: 245)
Name: NF5682_high_20
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682_high_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 35672259 - 35672031
Alignment:
| Q |
17 |
caagaccgtcgcattcggcgtctatggtagatgtgtttgaagcttcctctttagctcatccattaaatttctttgctccttgctccacaaaactttcctc |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35672259 |
caaggccgtcgcattcggcgtctatggtagatgtgttcgaagcttcctctttagctcatccattaaatttctttgctccttgctccacaaaactttcctc |
35672160 |
T |
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| Q |
117 |
tgaaaaataacagtttgttcaatgttgtcaatcgcaggttacagaaaataacaatttgttcaaatttcattacactatcgcgcaactatttaacaacttc |
216 |
Q |
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| T |
35672159 |
tgaaaaataacggtttgttcaatgttgtcaatcgcaggttacagaaaataacaatttgttcaaatttcattacactatcgcgcaactatttaacaacttc |
35672060 |
T |
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| Q |
217 |
aattatataccttgtgcttcagaagactt |
245 |
Q |
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| T |
35672059 |
aattatataccttgtgcttcagaagactt |
35672031 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 25207416 - 25207464
Alignment:
| Q |
134 |
ttcaatgttgtcaatcgcaggttacagaaaataacaatttgttcaaatt |
182 |
Q |
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| T |
25207416 |
ttcaatgttgtcgatcgcagattgcggaaaataacagtttgttcaaatt |
25207464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 9634864 - 9634912
Alignment:
| Q |
134 |
ttcaatgttgtcaatcgcaggttacagaaaataacaatttgttcaaatt |
182 |
Q |
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||||||||||||||| |||| |||||||||||| | |||||||||||| |
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| T |
9634864 |
ttcaatgttgtcaattgcagattacagaaaatagcggtttgttcaaatt |
9634912 |
T |
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