View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682_high_3 (Length: 557)
Name: NF5682_high_3
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 17584596 - 17585124
Alignment:
| Q |
11 |
aatatcataaaaaagcagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgat |
110 |
Q |
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| T |
17584596 |
aatatcataaaaaagtagtatatgcacagctcatcaggaggagccgtcacattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgat |
17584695 |
T |
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| Q |
111 |
tagcacaatggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaaccaccacc |
210 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17584696 |
tagcacaacggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagatgttgaatgtgccgcattgaagtaggaaccaccacc |
17584795 |
T |
|
| Q |
211 |
ctaaattttcaattatctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcgattgagtagagcaactattgattactt |
310 |
Q |
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| T |
17584796 |
ctaaattttcaattatctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcaattgagtagagcaactattgattactt |
17584895 |
T |
|
| Q |
311 |
ttgagaaattctggattgtcaaaacatgtacaac--atattctagaaatccatatttttgctttgtttttagaaagagattagaagctaagtgtgtctcc |
408 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17584896 |
ttgagaaattctggattgtcaaaacatgtacaacatatattctagaaatccatatttttgctttgtttttaaaaagagattagaagctaagtgtgtctcc |
17584995 |
T |
|
| Q |
409 |
taaaacttcatgaattccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaannnnnnnnnnnnnnnnggctggcaggc |
508 |
Q |
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| T |
17584996 |
taaaacttcatgaattccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaattttgtttttatttttggctggcaggc |
17585095 |
T |
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| Q |
509 |
atagctgatggctgatacaatctcatcac |
537 |
Q |
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| T |
17585096 |
atagctgatggctgatacaatctcatcac |
17585124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 226 - 534
Target Start/End: Complemental strand, 14741386 - 14741075
Alignment:
| Q |
226 |
tctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctgga |
325 |
Q |
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| T |
14741386 |
tctgtaaccatgtctaaaagaattttagagtccttgagttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctgga |
14741287 |
T |
|
| Q |
326 |
ttgtcaaaacatgta-caacatat--tctagaaatccatatttttgctttgtttttagaaagagattagaagctaagtgtgtctcctaaaacttcatgaa |
422 |
Q |
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| T |
14741286 |
ttgtcaaaacatgtaacaacatatattctagaaatccatatttttgctttgtttttaaaaagagattagaagctaagtgtgtctcctaaaacttcatgaa |
14741187 |
T |
|
| Q |
423 |
ttccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaannnnnnnnnnnnnnnnggctggcaggcatagctgatggctg |
522 |
Q |
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| T |
14741186 |
ttccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaattttgtttttatttttggctggcaggcatagctgatggctg |
14741087 |
T |
|
| Q |
523 |
atacaatctcat |
534 |
Q |
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| T |
14741086 |
atacaatctcat |
14741075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 14742482 - 14742262
Alignment:
| Q |
11 |
aatatcataaaaaagcagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgat |
110 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14742482 |
aatatcataaaaaagtagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaatttgctagccgat |
14742383 |
T |
|
| Q |
111 |
tagcacaatggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaaccaccacc |
210 |
Q |
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| T |
14742382 |
tagcacaacggttttcgtccttcaa----gacagaactgaacatgccaatataaagccaaaagacattgaatgtgccgcattgaagtaggaaccaccacc |
14742287 |
T |
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| Q |
211 |
ctaaattttcaattatctgtaacca |
235 |
Q |
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| T |
14742286 |
ctaaattttcaattatctgtaacca |
14742262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 38929841 - 38929922
Alignment:
| Q |
88 |
aaggctaaaattagctagccgattagcacaatggttt-tcttccttcaagtatgacagaactgaacatgccaatataaagcc |
168 |
Q |
| |
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|||||||||||||| ||||| || ||||||| |||| | ||||| |||||||||| ||||||||||| |||| ||||||| |
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| T |
38929841 |
aaggctaaaattagttagccaatcagcacaacagtttcttttcctccaagtatgacgaaactgaacatgtcaatctaaagcc |
38929922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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