View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682_high_4 (Length: 414)
Name: NF5682_high_4
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 24365500 - 24365091
Alignment:
| Q |
1 |
agtcatcggaggttcatggccaatacttgctagcttaaatatgtcattagtatagccatcatctccacttcaaactccatccatccaatccatggctagg |
100 |
Q |
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|||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24365500 |
agtcatcggaggttaatggcccatgcttgctagcttaaatatgtcattagcatagccatcatctccacttcaaactccatccatccaatccatggctagg |
24365401 |
T |
|
| Q |
101 |
gaagattctatnnnnnnnatccttttcttcaagatcatcctccaaactaatcttcataggattgtaagcattcttattagtactaattactttagaattc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24365400 |
gaagattctatcctccccatccttttcttcaagatcatcctccaaactaatcttcaaaggattgtaagcattcttattagtactaattactttagaattc |
24365301 |
T |
|
| Q |
201 |
ttagcatataaccacacatcacacatataacatgtcatatttgcatttcacatatt---tgtttatgatattagcactagctagaacttttcaacaaaac |
297 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||| ||||||||| ||||||| |||||||||||| |
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| T |
24365300 |
ttagcatataaccacacatcacacatgcaacatgtcatatatgcatttaacatattttctgtttacaatattagca----ctagaacatttcaacaaaac |
24365205 |
T |
|
| Q |
298 |
aaaatattagcacaagaaactttattatggatacacacataacac--gaatatcgtttaactttcactcttgtatttctaga-aaga-atatttatattt |
393 |
Q |
| |
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||||||||||||| |||| ||||||||||||| ||| ||||||| |||||||||||||||| |||| || |||| ||| | |||| || ||||||||| |
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| T |
24365204 |
aaaatattagcactagaagttttattatggatagacatataacacatgaatatcgtttaacttccactgttctattcctatagaagagatgtttatattt |
24365105 |
T |
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| Q |
394 |
gagaccctttgctt |
407 |
Q |
| |
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| T |
24365104 |
gacaccttttgctt |
24365091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 119 - 395
Target Start/End: Original strand, 24357944 - 24358212
Alignment:
| Q |
119 |
atccttttcttcaagatcatcctccaaactaatcttcataggattgtaagcattcttattagtac--taatt-actttagaattcttagcatataaccac |
215 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||| |
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| T |
24357944 |
atccgtttcttcaagatcatcctccaaactaatcttcataggattgtaagcattcctatcagtacagtaatttactttagaattcttagcat-------- |
24358035 |
T |
|
| Q |
216 |
acatcacacatataacatgtcatatttgcatttcacatattt---gtttatgatattagcactagctagaacttttcaacaaaacaaaatattagcacaa |
312 |
Q |
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||||||| ||||||| |||| | ||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||| |||| | |
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| T |
24358036 |
----cacacatgcaacatgttatatattcatttaacatattttctgtttacaatattagcactag----aacttttcaacaaaacaaaatattggcacta |
24358127 |
T |
|
| Q |
313 |
gaaactttattatggatacacacataacac--gaatatcgtttaactttcactcttgtatttctagaaagaatatttatatttga |
395 |
Q |
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| T |
24358128 |
gaaattttattatggatatacacataacacatgaatattgtttaactatcactgttgtatttctagaaagaataattgtatttga |
24358212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 24369326 - 24369392
Alignment:
| Q |
119 |
atccttttcttcaagatcatcctccaaactaatcttcataggattgtaagcattcttattagtacta |
185 |
Q |
| |
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|||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24369326 |
atccgtttcttcaaaatcatccttcaaactaatcttcataggattgtaagcattctttttagtacta |
24369392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 24351059 - 24351125
Alignment:
| Q |
119 |
atccttttcttcaagatcatcctccaaactaatcttcataggattgtaagcattcttattagtacta |
185 |
Q |
| |
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|||| |||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
24351059 |
atccgtttcttcaagattattctccaaactaatcttcaaaggattgtaagcattcctattagtacta |
24351125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 24361698 - 24361747
Alignment:
| Q |
124 |
tttcttcaagatcatcctccaaactaatcttcataggattgtaagcattc |
173 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
24361698 |
tttcttcaagatcatcctccaaacaaatcttcaaaggattgtaagcattc |
24361747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 24354393 - 24354444
Alignment:
| Q |
119 |
atccttttcttcaagatcatcctccaaactaatcttcataggattgtaagca |
170 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
24354393 |
atccatttcttcaagatcatcctccaaactaatcttcaaaggattgtgagca |
24354444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 24313108 - 24313162
Alignment:
| Q |
119 |
atccttttcttcaagatcatcctccaaactaatcttcataggattgtaagcattc |
173 |
Q |
| |
|
|||| |||||||||||| || || |||||||||||||| |||||||||||||||| |
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|
| T |
24313108 |
atccgtttcttcaagattattcttcaaactaatcttcaaaggattgtaagcattc |
24313162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 24354280 - 24354309
Alignment:
| Q |
26 |
cttgctagcttaaatatgtcattagtatag |
55 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24354280 |
cttgctagcttaaatatgtcattagtatag |
24354309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 24369459 - 24369523
Alignment:
| Q |
245 |
atttcacatattt---gtttatgatattagcactagctagaacttttcaacaaaacaaaatattagcac |
310 |
Q |
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| T |
24369459 |
atttcacatattttctgtttataatattagcactag----aacttttcaactaaacaaaatattagcac |
24369523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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