View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5682_low_15 (Length: 304)

Name: NF5682_low_15
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5682_low_15
NF5682_low_15
[»] chr5 (2 HSPs)
chr5 (150-188)||(38685296-38685334)
chr5 (150-183)||(10948766-10948799)
[»] chr4 (1 HSPs)
chr4 (155-195)||(18814805-18814845)
[»] chr6 (1 HSPs)
chr6 (156-193)||(24105283-24105320)
[»] chr3 (1 HSPs)
chr3 (152-189)||(2304055-2304092)


Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 38685334 - 38685296
Alignment:
Q  150 tggaagtaattgaatataaccacatgtgtcagtgtcatg 188  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  38685334 tggaagtaattgaatgtaaccacatgtgtcagtgtcatg 38685296  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 10948799 - 10948766
Alignment:
Q  150 tggaagtaattgaatataaccacatgtgtcagtg 183  Q
    ||||||||||||||||||||||||||||| ||||    
T  10948799 tggaagtaattgaatataaccacatgtgttagtg 10948766  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 18814845 - 18814805
Alignment:
Q  155 gtaattgaatataaccacatgtgtcagtgtcatgttggtgt 195  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  18814845 gtaattgaatataaccacatgtgttagtgtcgtgttggtgt 18814805  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 24105320 - 24105283
Alignment:
Q  156 taattgaatataaccacatgtgtcagtgtcatgttggt 193  Q
    ||||||||||||| || |||||||||||||||||||||    
T  24105320 taattgaatataatcaaatgtgtcagtgtcatgttggt 24105283  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 2304092 - 2304055
Alignment:
Q  152 gaagtaattgaatataaccacatgtgtcagtgtcatgt 189  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  2304092 gaagtaattgaacataaccacatgtgtcagtatcatgt 2304055  T

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