View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682_low_18 (Length: 287)
Name: NF5682_low_18
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682_low_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 25286673 - 25286959
Alignment:
| Q |
1 |
catttgtttctttatttcagtccttaataacatgcgctcatatttcattccttaacctcgactgaattaattgacgcacattcttcttccaaacaatgct |
100 |
Q |
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| T |
25286673 |
catttgtttctttatttcagttcttaataacatgcgctcatatttcattacctgacctcgactgaattaattgacgcacattcttcttccaaacaatgct |
25286772 |
T |
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| Q |
101 |
attcatagtgcatagattttgaaaagctcgcaaactaagaattcgagatctgcaaacatagnnnnnnngtgcaagtgcaagaaattgcaagtgctttatg |
200 |
Q |
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| T |
25286773 |
attcatagtgcatagattttgaaaagctcgcaaactaagaattcgagatctgcaaacatagaaaaaaggtgtatgtgcaggaaattgcaagtgctttatg |
25286872 |
T |
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| Q |
201 |
aaacaatgctattcatggtgcaaagattttgaaaagctcacaaacttagaattcgagctctacaaacataggaaaaaaggtttaagt |
287 |
Q |
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| T |
25286873 |
aaacaatgctattcatagtgcatagattttgaaaatctcacaaacttagaattcgagctctacaaacataggaaaaaaggtttaagt |
25286959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 15831500 - 15831697
Alignment:
| Q |
2 |
atttgtttctttatttcagtccttaataacatgcgctcatatttcattccttaacctcgactgaattaattgacgcacattcttcttccaaacaatgcta |
101 |
Q |
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| T |
15831500 |
atttgtttctttatttcagtcctttataacatgcactcgtatttcattccttaacctcgactgaattaattgatacacattctttttcgaaacaatgcta |
15831599 |
T |
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| Q |
102 |
ttcatagtgcatagattttgaaaagctcgcaaactaagaattcgagatctgcaaacatagnnnnnnngtgcaagtgcaagaaattgcaagtgctttat |
199 |
Q |
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| T |
15831600 |
ttcacagtgcttagattttgaaaaactcacaaactaagaatttgagctttgcaaatatagaaaaaaggtgtaagtgcaataaattgcaagtgctttat |
15831697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 15815184 - 15815382
Alignment:
| Q |
2 |
atttgtttctttatttcagtccttaataacatgcgctcatatttcattccttaacctcgactgaattaattgacgcacattcttcttccaaacaatgcta |
101 |
Q |
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| T |
15815184 |
atttgtttctttatttcagttctttataacatgcactcgtatttcattccttaacctcgactgaattaattgatatacattctttttcgaaacaatgcta |
15815283 |
T |
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| Q |
102 |
ttcatagtgcatagattttgaaaagctcgcaaactaagaattcgagatctgcaaacatag-nnnnnnngtgcaagtgcaagaaattgcaagtgctttat |
199 |
Q |
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| T |
15815284 |
ttcacagtgcatagattttgaaaaactcacaaactaagaatttgagctttgcaaatatagaaaaaaaagtgtaagtgcaataaattgcaagtgctttat |
15815382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 15815272 - 15815359
Alignment:
| Q |
200 |
gaaacaatgctattcatggtgcaaagattttgaaaagctcacaaacttagaattcgagctctacaaacataggaaaaaaggtttaagt |
287 |
Q |
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| T |
15815272 |
gaaacaatgctattcacagtgcatagattttgaaaaactcacaaactaagaatttgagctttgcaaatatagaaaaaaaagtgtaagt |
15815359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 15831588 - 15831674
Alignment:
| Q |
200 |
gaaacaatgctattcatggtgcaaagattttgaaaagctcacaaacttagaattcgagctctacaaacataggaaaaaaggtttaagt |
287 |
Q |
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| T |
15831588 |
gaaacaatgctattcacagtgcttagattttgaaaaactcacaaactaagaatttgagctttgcaaatata-gaaaaaaggtgtaagt |
15831674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15737359 - 15737400
Alignment:
| Q |
1 |
catttgtttctttatttcagtccttaataacatgcgctcata |
42 |
Q |
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| T |
15737359 |
catttgtgtctttatttcagtccttaataacatgcactcata |
15737400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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