View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682_low_19 (Length: 285)
Name: NF5682_low_19
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 24 - 269
Target Start/End: Complemental strand, 36067262 - 36067013
Alignment:
| Q |
24 |
actttttgttgaagaggataatagtgatgatgatagtagcaactcaacatagtgccccaatgatat----gaacctttaagggacactttaaacccaact |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36067262 |
acttgttgttgaagaggataatagtgatgatgatagtagcaactcaacatagtgccccaatgatatatatgaacctttaagggacactttaaacccaact |
36067163 |
T |
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| Q |
120 |
ttcaagagttgaaaattagttttaagaatatataatgagatttgggtgcatggcatgatgcccatttgctttgttttatttgatttaaattgtcataaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36067162 |
ttcaagagttgaaaattagttttaagaatatataatgagatttgggtgcatggcatgatgcccatttgctttgttttacttgatttaaattgtcataaaa |
36067063 |
T |
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| Q |
220 |
tgtgtggtcaagactttgtatgaattatgccaaacacttaaatttatttt |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36067062 |
tgtgtggtcaagactttgtatgaattatgccaaacacttaaatttatttt |
36067013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 29024596 - 29024496
Alignment:
| Q |
24 |
actttttgttgaagaggataatagtgatgatgatagtagcaactcaacatagtgccccaatgatatgaacctttaagggacactttaaacccaactttca |
123 |
Q |
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|||| ||||||||||||| | | ||||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||| | |||||||||| |
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| T |
29024596 |
acttgttgttgaagaggaagacatggatgatgatagtagcaactcaacatagtggctcaatcatatgaacctttaaggaacacttt--atccaactttca |
29024499 |
T |
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| Q |
124 |
aga |
126 |
Q |
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||| |
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| T |
29024498 |
aga |
29024496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 31685599 - 31685485
Alignment:
| Q |
112 |
acccaactttcaagagttgaaaattagttttaagaatatataatgagatttgggtgcatggcatgatgcccatttgctttgttttatttgatttaaattg |
211 |
Q |
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|||||| ||| |||||||||||||| |||| ||||||| | || || ||| | ||||| |||| ||| |||||| |||||||||||||||||| ||| |
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| T |
31685599 |
acccaatttttaagagttgaaaatttgtttcaagaataaagaacaaggcttgcgcgcatgacatgctgctaatttgcattgttttatttgatttaagttg |
31685500 |
T |
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| Q |
212 |
tcataaaatgtgtgg |
226 |
Q |
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| T |
31685499 |
taataaaatgtgtgg |
31685485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 48474551 - 48474599
Alignment:
| Q |
178 |
tgcccatttgctttgttttatttgatttaaattgtcataaaatgtgtgg |
226 |
Q |
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|||||||||||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
48474551 |
tgcccatttgctttgtttaatttgatttaagttgtaataaaatgtgtgg |
48474599 |
T |
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