View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5682_low_22 (Length: 251)
Name: NF5682_low_22
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5682_low_22 |
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| [»] scaffold0049 (1 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 40653293 - 40653533
Alignment:
| Q |
1 |
cacactgtaacatacttttatgttttcctgcacttgctttgtcaacaatttttatttgcatgcactgatagttttgtttcttcttccaattggattaggg |
100 |
Q |
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| T |
40653293 |
cacactgtaacatacttttatgttttcctgcacttgctttgtcaacaatttttatttgcatgcactgatagttttgtttcttcttccaattggatcaggg |
40653392 |
T |
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| Q |
101 |
gagagcgaactgtgaaatcattgcgactttcaaaggcattgacagtgcctgaaacaacaacagtctatgaagcttgtcgtcgaatggctgttcgcagagt |
200 |
Q |
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| T |
40653393 |
gagagcgaactgtgaaatcattgcgactttcaaaggcattgacagtgcctgaaacaacaacagtctatgaagcttgtcgtcgaatggctgttcgcagagt |
40653492 |
T |
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| Q |
201 |
agatgctctgttactaactgattctaatgctttgctctgtg |
241 |
Q |
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| T |
40653493 |
agatgctctgttactaactgattctaatgctttgctctgtg |
40653533 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 45427850 - 45427979
Alignment:
| Q |
100 |
ggagagcgaactgtgaaatcattgcgactttcaaaggcattgacagtgcctgaaacaacaacagtctatgaagcttgtcgtcgaatggctgttcgcagag |
199 |
Q |
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| T |
45427850 |
ggagagcggacagtgaagtcattgcgactttcgaaagccctgacagtacctgaaacaacaactgtatatgaagcctgtcgtcggatggctgcccgtaggg |
45427949 |
T |
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| Q |
200 |
tagatgctctgttactaactgattctaatg |
229 |
Q |
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| T |
45427950 |
tggatgctctattactcaccgattctaatg |
45427979 |
T |
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Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 4458 - 4392
Alignment:
| Q |
163 |
gtctatgaagcttgtcgtcgaatggctgttcgcagagtagatgctctgttactaactgattctaatg |
229 |
Q |
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| T |
4458 |
gtctatgaaacttgttgtcgaatggctgtttgcaaagtagatgctctatttctaactgattcgaatg |
4392 |
T |
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Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 144731 - 144797
Alignment:
| Q |
163 |
gtctatgaagcttgtcgtcgaatggctgttcgcagagtagatgctctgttactaactgattctaatg |
229 |
Q |
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| T |
144731 |
gtctatgaaacttgttgtcgaatggctgtttgcaaagtagatgctctatttctaactgattcgaatg |
144797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 33230910 - 33230845
Alignment:
| Q |
164 |
tctatgaagcttgtcgtcgaatggctgttcgcagagtagatgctctgttactaactgattctaatg |
229 |
Q |
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|||||||| ||||| |||||||| ||||| ||| |||||| ||||| || ||||||||||| |||| |
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| T |
33230910 |
tctatgaaacttgttgtcgaatgactgtttgcaaagtagaagctctatttctaactgattcgaatg |
33230845 |
T |
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