View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683-Insertion-1 (Length: 406)
Name: NF5683-Insertion-1
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 23031261 - 23030864
Alignment:
| Q |
8 |
gagcgtactaaaatgtatgctatttagaaatttagaaattattataatnnnnnnntttcacttccactcttttccattgtgcaatttattcacataaaaa |
107 |
Q |
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| T |
23031261 |
gagcgtactaaaatgtatgctatttagaaatttagaaattattataataaaaaaatttcacttccactcttttccattgtgcaatttattcacataaaaa |
23031162 |
T |
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| Q |
108 |
tattatatatacaattgaagacagaagtagatgaggtatttcaaaatacctcgtttaatttgaaaacaataacataatagaatgttgcaannnnnnnnat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23031161 |
tattatatatacaattgaagacagaagtagatgaggtatttcaaaatacctcgtttaatttgaaaacaataacataatagaatgttgcaattttttttat |
23031062 |
T |
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| Q |
208 |
gttagaacgtaatagaaaataattaagtgattgattttgaggggataactaagtaattgataaaaataaattttattgttataatataa-nnnnnnnngg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23031061 |
gttagaacgtaatagaaaataattaagtgattgattt--aggggataactaagtaattgataaaaataaattttattgttataatataatttttttttgg |
23030964 |
T |
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| Q |
307 |
tagaaagtaatataaaataattgagtgattgcaaaagaaaaatataacaagtnnnnnnnnggtttaattgtgtttttagtttccacaattctattttagg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
23030963 |
tagaaagtaatataaaataattgagtgattgcaaaagaaaaatataacaagtaaaaaaaaagtttaattgtatttttagtttccacaattctattttagg |
23030864 |
T |
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