View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5683-Insertion-3 (Length: 715)
Name: NF5683-Insertion-3
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683-Insertion-3 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 597; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 8 - 715
Target Start/End: Original strand, 5273078 - 5273771
Alignment:
| Q |
8 |
tctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacattttctttccaactaaacgaaacctttcaccaatgagc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273078 |
tctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacattttctttccaactaaacgaaacctttcaccaatgagc |
5273177 |
T |
|
| Q |
108 |
atcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtactatcaaatatcaatcaagtagtaatctcaagtgtcctaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5273178 |
atcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtactatcaa-------tcaagtagtaatctcaagtgtcctaa |
5273270 |
T |
|
| Q |
208 |
acactaatcaacattcaaaactctttaaaacaattacttactacaatgatgaaactacgatctcttttctttgcctcaattctacagctactaattctca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273271 |
acactaatcaacattcaaaactctttaaa-caattacttactacaatgatgaaactacgatctcttttctttgcctcaattctacagctactaattctca |
5273369 |
T |
|
| Q |
308 |
ccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagcaccaggtttcaacacagtcccccttgtacc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273370 |
ccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagcaccaggtttcaacacagtcccccttgtacc |
5273469 |
T |
|
| Q |
408 |
agtaaccccgagtggggcccccaccccaaatattctcccaaaatcaccatccatagacattatccaaatcctcaaaagagcaaaaagattctcagttctc |
507 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5273470 |
agtaaccccgagtggggcccccacccctaatattctcccaaaatcaccatccatagacattatccaaatcctcaaaaaagcaaaaagattctcagttctc |
5273569 |
T |
|
| Q |
508 |
attcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagttannnnnnnnnnnnnnnnnnnngattctagcagtggtggcttaaccc |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5273570 |
attcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagtta------catcatcatcatcagattctagcagtggtggcttaaccc |
5273663 |
T |
|
| Q |
608 |
tttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttacaattccatacact |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5273664 |
tttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttacaattccacacact |
5273763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 5268732 - 5268833
Alignment:
| Q |
70 |
ttttctttccaactaaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtact |
169 |
Q |
| |
|
||||||||| | |||||| ||||||| || |||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||| | | ||||||| |
|
|
| T |
5268732 |
ttttctttctacctaaactaaaccttgcatcaattagcatcctcaataaaaggcaatccattctccctcattcctcacaaaaggacaccagttaagtact |
5268831 |
T |
|
| Q |
170 |
at |
171 |
Q |
| |
|
|| |
|
|
| T |
5268832 |
at |
5268833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 695
Target Start/End: Original strand, 36151143 - 36151243
Alignment:
| Q |
595 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
694 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| |||| |
|
|
| T |
36151143 |
ggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttac |
36151242 |
T |
|
| Q |
695 |
a |
695 |
Q |
| |
|
| |
|
|
| T |
36151243 |
a |
36151243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 601 - 695
Target Start/End: Original strand, 36154535 - 36154629
Alignment:
| Q |
601 |
ttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttaca |
695 |
Q |
| |
|
|||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| ||||| |
|
|
| T |
36154535 |
ttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttaca |
36154629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 551
Target Start/End: Original strand, 36151053 - 36151114
Alignment:
| Q |
490 |
aaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactc |
551 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||||||||| || ||||| || ||||||||||| |
|
|
| T |
36151053 |
aaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactc |
36151114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 551
Target Start/End: Original strand, 36154439 - 36154500
Alignment:
| Q |
490 |
aaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactc |
551 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||||||||| || ||||| || ||||||||||| |
|
|
| T |
36154439 |
aaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactc |
36154500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University