View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5683-Insertion-4 (Length: 630)

Name: NF5683-Insertion-4
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5683-Insertion-4
NF5683-Insertion-4
[»] chr4 (4 HSPs)
chr4 (9-341)||(19964724-19965056)
chr4 (331-621)||(4231709-4231999)
chr4 (9-91)||(4231241-4231323)
chr4 (186-243)||(4231412-4231469)
[»] chr2 (8 HSPs)
chr2 (304-611)||(33861051-33861361)
chr2 (9-243)||(33860610-33860845)
chr2 (331-613)||(34691069-34691349)
chr2 (331-613)||(34713481-34713761)
chr2 (539-613)||(16232624-16232698)
chr2 (154-243)||(16232102-16232191)
chr2 (154-243)||(34690761-34690850)
chr2 (154-243)||(34713173-34713262)
[»] chr1 (25 HSPs)
chr1 (267-621)||(7890797-7891151)
chr1 (331-613)||(45993253-45993535)
chr1 (331-621)||(3300972-3301262)
chr1 (277-618)||(7888535-7888876)
chr1 (331-621)||(43045236-43045526)
chr1 (331-621)||(43045689-43045979)
chr1 (331-621)||(43066428-43066718)
chr1 (331-621)||(43084117-43084407)
chr1 (304-606)||(38137628-38137930)
chr1 (9-243)||(45983972-45984200)
chr1 (538-621)||(51292064-51292147)
chr1 (304-621)||(45983465-45983776)
chr1 (157-243)||(50912297-50912383)
chr1 (545-621)||(40034453-40034529)
chr1 (154-243)||(38138136-38138225)
chr1 (171-243)||(43044932-43045004)
chr1 (171-243)||(43066987-43067059)
chr1 (171-243)||(43083776-43083848)
chr1 (154-243)||(3300649-3300738)
chr1 (421-610)||(43076553-43076741)
chr1 (171-243)||(43076842-43076914)
chr1 (9-91)||(7891374-7891456)
chr1 (9-91)||(50912155-50912237)
chr1 (52-121)||(38138252-38138321)
chr1 (154-242)||(7891229-7891317)
[»] chr8 (10 HSPs)
chr8 (267-618)||(1846570-1846921)
chr8 (535-610)||(4787274-4787349)
chr8 (425-611)||(4620026-4620212)
chr8 (154-243)||(4619604-4619693)
chr8 (538-606)||(4297922-4297990)
chr8 (154-242)||(1846404-1846492)
chr8 (156-243)||(4297399-4297486)
chr8 (9-91)||(1846265-1846347)
chr8 (9-91)||(4619465-4619547)
chr8 (33-93)||(4787830-4787890)
[»] chr5 (2 HSPs)
chr5 (332-606)||(16349382-16349656)
chr5 (155-243)||(16349063-16349151)
[»] chr6 (3 HSPs)
chr6 (557-621)||(7528843-7528907)
chr6 (347-500)||(7519593-7519746)
chr6 (347-500)||(7528964-7529117)
[»] chr7 (1 HSPs)
chr7 (171-243)||(39242545-39242617)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 19965056 - 19964724
Alignment:
Q  9 aaaattcaccaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaaccttgtagaaaccatgaattggtatc 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19965056 aaaattcatcaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaaccttgtagaaaccatgaattcgtatc 19964957  T
Q  109 ctgagaggcttgtgaatttccctcatagacacaggcagttttaaatggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  19964956 ctgagaggcttgtgaatttccctcatagacacaggcagtttcaaatggtcaagagcttcgataagggtgggaccgtcgtacctaccaaggttagtagagg 19964857  T
Q  209 gctcaaccaagttatctccctcaaaaccagagatgaagtatccttttaatttctagaaacctatccatggagtatgtaggtgttgtggcatccatcttgt 308  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19964856 gctcaaccaagttatctcgctcaaaaccagagatgaagtatccttttaatttctagaaacctatccatggagtatgtaggtgttgtggcatccatcttgt 19964757  T
Q  309 tgatgcagcaaatcattcgaggcacaccaagag 341  Q
    ||||||||||||||||| ||||||||| |||||    
T  19964756 tgatgcagcaaatcattggaggcacacgaagag 19964724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 331 - 621
Target Start/End: Original strand, 4231709 - 4231999
Alignment:
Q  331 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 430  Q
    ||||||||||| | | ||||| |||||||||||||| ||| |||||||||| |||| ||||  ||||||| ||||||  || ||||| | ||| |||| |    
T  4231709 cacaccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagcttcaaaaccaccagtggtggaatcaatgatgagaaca 4231808  T
Q  431 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 530  Q
    ||||||||||| |||||||  ||| |||||||||| | |||||||||||| ||||||| ||||||||||| |||| || ||   || |  || ||||| |    
T  4231809 gcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaact 4231908  T
Q  531 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 621  Q
    ||  || || || ||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||| |||||||    
T  4231909 tccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttaaatgaacgcttgttcat 4231999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 4231241 - 4231323
Alignment:
Q  9 aaaattcaccaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaaccttgtaga 91  Q
    |||| |||||||||| |||||| ||| |  ||||||| ||| |||||||||||| ||| |||| |||||||||| ||||||||    
T  4231241 aaaagtcaccaccattccaggtttcatggtaccagtctcaacacgtcccacaggaacagttccaattcctccaatcttgtaga 4231323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 4231412 - 4231469
Alignment:
Q  186 gtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    ||||||| |||| || |||||| |||||| || |||||||||||||||||||||||||    
T  4231412 gtaccagtcaagatttgtagagcgctcaatcatgttatctccctcaaaaccagagatg 4231469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 5e-64; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 304 - 611
Target Start/End: Original strand, 33861051 - 33861361
Alignment:
Q  304 cttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagca 403  Q
    ||||||||||||||| |||||| ||||||||||||||| | |||| ||||| ||||||||||||||| |||||| |||||||||||||  ||||||| ||    
T  33861051 cttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccatgcttagaaaaaccaacttcaaaacca 33861150  T
Q  404 ccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatag 503  Q
    |||||||  ||||| |||||||||||||| |||||||| | ||||| ||||||||||||||| | |||  ||||||| ||||||| ||||||||||| ||    
T  33861151 ccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatataatccctgtgtccaggggcatcaatgacag 33861250  T
Q  504 tgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcaccca---agcata 600  Q
    |||| | |   |    ||| ||||||||  |||||||||||||||| | ||||||||||||||||||||||  ||| |||||||| |||||   ||||||    
T  33861251 tgtaccggtactggtttgtctcaaaattacgcatagaaacgtcaatggagatacctctttcacgctcagcctcgagcttgtcaagaacccaattagcata 33861350  T
Q  601 cttgaatgaac 611  Q
    |||||||||||    
T  33861351 cttgaatgaac 33861361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 33860610 - 33860845
Alignment:
Q  9 aaaattcaccaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaacctt-gtagaaaccatgaattggtat 107  Q
    |||| ||||| |||| |||||| |||||| ||||||||||| |||||| ||| ||||||||||||||||||||| ||| ||||| |||||||| ||||||    
T  33860610 aaaagtcaccgccattccaggtttcaagtgaccagtcacaacacgtcctacatgcacatttccgattcctccaatctttgtagacaccatgaagtggtat 33860709  T
Q  108 cctgagaggcttgtgaatttccctcatagacacaggcagttttaaatggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagag 207  Q
     | |||||| ||| ||| |  ||||  ||||| ||||| ||  | | |||||| |||||| | |||||||||||| | ||||||| |||| |||||||||    
T  33860710 tcggagaggattgagaaatagcctcgcagacagaggcaattagatacggtcaagagcttcaagaagggtgggacccttgtaccagtcaagattagtagag 33860809  T
Q  208 ggctcaaccaagttatctccctcaaaaccagagatg 243  Q
     |||||| ||||||||||||||||||||||||||||    
T  33860810 cgctcaatcaagttatctccctcaaaaccagagatg 33860845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 331 - 613
Target Start/End: Original strand, 34691069 - 34691349
Alignment:
Q  331 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 430  Q
    ||||||||||| | ||||||||||||||||||| | |||| |||||| ||||||  |||||  |   ||| | | || ||| ||||| | ||  |||| |    
T  34691069 cacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaaca 34691168  T
Q  431 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 530  Q
    ||||| ||||| ||||| | |||  | |||||||| | |||||||||||| ||||| |  |||||||||| |||| |||||   || | ||| ||||| |    
T  34691169 gcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaact 34691268  T
Q  531 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgc 613  Q
    |  ||||||||| ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  34691269 t--gcatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgc 34691349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 331 - 613
Target Start/End: Original strand, 34713481 - 34713761
Alignment:
Q  331 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 430  Q
    ||||||||||| | ||||||||||||||||||| | |||| |||||| ||||||  |||||  |   ||| | | || ||| ||||| | ||  |||| |    
T  34713481 cacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaaca 34713580  T
Q  431 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 530  Q
    ||||| ||||| ||||| | |||  | |||||||| | |||||||||||| ||||| |  |||||||||| |||| |||||   || | ||| ||||| |    
T  34713581 gcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaact 34713680  T
Q  531 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgc 613  Q
    |  ||||||||| ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  34713681 t--gcatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgc 34713761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 539 - 613
Target Start/End: Original strand, 16232624 - 16232698
Alignment:
Q  539 gaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgc 613  Q
    |||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  16232624 gaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgc 16232698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 16232102 - 16232191
Alignment:
Q  154 tggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    ||||||| |||||| | |||||| || || || |||||| |||||||||||||| ||||||| | |||||||| || |||||||||||||    
T  16232102 tggtcaatagcttcaacaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcacttaaaaccagagatg 16232191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 34690761 - 34690850
Alignment:
Q  154 tggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    ||||||| |||||| | |||||| ||||| ||||||||| |||||||||| ||| ||||||  | ||||||||||| | |||||||||||    
T  34690761 tggtcaagagcttcaagaagggtaggaccttcgtaccagtcaaggttagtcgagcgctcaatgatgttatctcccttataaccagagatg 34690850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 34713173 - 34713262
Alignment:
Q  154 tggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    ||||||| |||||| | |||||| ||||| ||||||||| |||||||||| ||| ||||||  | ||||||||||| | |||||||||||    
T  34713173 tggtcaagagcttcaagaagggtaggaccttcgtaccagtcaaggttagtcgagcgctcaatgatgttatctcccttataaccagagatg 34713262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 267 - 621
Target Start/End: Complemental strand, 7891151 - 7890797
Alignment:
Q  267 acctatccatggagtatgtaggtgttgtggcatccatcttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacg 366  Q
    |||||||| |||||||| | ||||| |||||||||||||||||    ||||| |||||| | |  |||||||||||| | |||||  || ||||||||      
T  7891151 acctatccttggagtatttgggtgtagtggcatccatcttgttacaacagcagatcatttgtgaaacaccaagagcgaatgcaagttgaacatgttcagt 7891052  T
Q  367 ggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgtta 466  Q
    |||| |||||| |||| ||||||||   |||||| ||||| | |||||||| | |||||||| |||||| ||||| | ||| |  ||| | ||||||||     
T  7891051 ggtctgaccattcttacaaaaaccagcgtcaaaaccaccaagtgtagaatcaatgataagaacagcacagtcagcttcggacgctccagtgatcatgttc 7890952  T
Q  467 tgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcac 566  Q
    | |||||||||||| ||||||| ||||||||||| |||| ||| |  ||| | ||| ||||| |||  || ||||| |||||||||||||||||||||||    
T  7890951 ttaatgaaatccctgtgtccaggggcatcaatgagagtgcagcggaagttggttgtctcaaacttccacagagaaatgtcaattgtgatacctctttcac 7890852  T
Q  567 gctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 621  Q
    |||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||    
T  7890851 gctcggccttgagcttgtcaagcacccaagcatacttgaatgaatgcctgttcat 7890797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 331 - 613
Target Start/End: Complemental strand, 45993535 - 45993253
Alignment:
Q  331 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 430  Q
    ||||||||||| | |||||||||||||||||||||| ||| |||||||||| |||| |||   ||||||| ||| || ||| ||||| | ||| |||| |    
T  45993535 cacaccaagagtgaaggcaagaagagcatgttcacgagtctgaccatcctttgaaataccggcttcaaaaccacgagtagtggaatcaatgatgagaaca 45993436  T
Q  431 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 530  Q
    ||||||||||| ||||| | |||  | |||||||| | |||||||||||| ||||| | ||||||||||| |||| ||| |   ||   ||| ||||| |    
T  45993435 gcacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaatgacagtgcagctgtacttgtttgtctcaaact 45993336  T
Q  531 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgc 613  Q
    ||  || ||||  ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  45993335 tcgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaagcacccaagcatacttgaatgaacgc 45993253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 331 - 621
Target Start/End: Original strand, 3300972 - 3301262
Alignment:
Q  331 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 430  Q
    ||||||||||| | | ||||||||||| |||||||||||| | |||||||| || | |||   ||||||| |||| | ||| ||||| | ||| |||| |    
T  3300972 cacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgatataccggcttcaaaaccaccggtagtggaatcaatgatcagaaca 3301071  T
Q  431 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 530  Q
    ||||||||||| |||||||  ||| |||||||||| | |||||||||||| ||||| | ||||||||||| |||| || ||   || |  || ||||| |    
T  3301072 gcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaact 3301171  T
Q  531 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 621  Q
    ||  || || || |||||||||||||||||||||||  |||||| |||| ||||| ||||||||||||||||||||||||||| |||||||    
T  3301172 tccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcat 3301262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 277 - 618
Target Start/End: Complemental strand, 7888876 - 7888535
Alignment:
Q  277 ggagtatgtaggtgttgtggcatccatcttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacgggtccgacca 376  Q
    ||||||| | ||||| ||||||||||||||||||  |||||| ||||||      ||||| |||||| |||||||  || ||||||||  |||| |||||    
T  7888876 ggagtatatgggtgtagtggcatccatcttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgacca 7888777  T
Q  377 tccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaat 476  Q
    |||||| |||||||   ||||||| ||||||  || ||||| | ||| |||| |||||||||||| |  || | |||  | |||||||| |  |||||||    
T  7888776 tccttacaaaaaccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaat 7888677  T
Q  477 ccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccat 576  Q
    |||| ||||| | ||||||||||| |||| |||||  | | | ||| | ||| |||   | ||||| ||||||||||||||||||||||||||||||| |    
T  7888676 ccctgtgtccgggggcatcaatgagagtgcagcagtagctggttgtctgaaacttccaaagagaaatgtcaattgtgatacctctttcacgctcagcctt 7888577  T
Q  577 gagtttgtcaagcacccaagcatacttgaatgaacgcctgtt 618  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  7888576 gagtttgtcaagcacccaagcatacttgaataaacgtctgtt 7888535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 331 - 621
Target Start/End: Original strand, 43045236 - 43045526
Alignment:
Q  331 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 430  Q
    ||||||||||| | | ||||| |||||||||||||||||| ||||||||||||||| |||   ||||||| |||||| ||| ||||| | ||| ||||      
T  43045236 cacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacg 43045335  T
Q  431 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 530  Q
    ||||||||||| |||||||  ||  | |||||||| | |||||||||||| ||||| | |||||| |||| |||| || ||   || | ||| ||||| |    
T  43045336 gcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaact 43045435  T
Q  531 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 621  Q
    ||   | || || |||||| ||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||| |||||||    
T  43045436 tccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcat 43045526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 331 - 621
Target Start/End: Original strand, 43045689 - 43045979
Alignment:
Q  331 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 430  Q
    ||||||||||| | | ||||| |||||||||||||||||| ||||||||||||||| |||   ||||||| |||||| ||| ||||| | ||| ||||      
T  43045689 cacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacg 43045788  T
Q  431 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 530  Q
    ||||||||||| |||||||  ||  | |||||||| | |||||||||||| ||||| | |||||| |||| |||| || ||   || | ||| ||||| |    
T  43045789 gcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaact 43045888  T
Q  531 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 621  Q
    ||   | || || |||||| ||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||| |||||||    
T  43045889 tccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcat 43045979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 331 - 621
Target Start/End: Complemental strand, 43066718 - 43066428
Alignment:
Q  331 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 430  Q
    ||||||||||| | | ||||| |||||||||||||||||| ||||||||||||||| |||   ||||||| |||||| ||| ||||| | ||| ||||      
T  43066718 cacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacg 43066619  T
Q  431 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 530  Q
    ||||||||||| |||||||  ||  | |||||||| | |||||||||||| ||||| | |||||| |||| |||| || ||   || | ||| ||||| |    
T  43066618 gcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaact 43066519  T
Q  531 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 621  Q
    ||   | || || |||||| ||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||| |||||||    
T  43066518 tccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaagaacccaggcatacttgaatgaacgcttgttcat 43066428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 331 - 621
Target Start/End: Original strand, 43084117 - 43084407
Alignment:
Q  331 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 430  Q
    ||||||||||| | | ||||| |||||||||||||||||| ||||||||||||||| |||   ||||||| |||||| ||| ||||| | ||| ||||      
T  43084117 cacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacg 43084216  T
Q  431 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 530  Q
    ||||||||||| |||||||  ||  | |||||||| | |||||||||||| ||||| | |||||| |||| |||| || ||   || | ||| ||||| |    
T  43084217 gcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaact 43084316  T
Q  531 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 621  Q
    ||   | || || |||||| ||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||| |||||||    
T  43084317 tccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcat 43084407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 304 - 606
Target Start/End: Complemental strand, 38137930 - 38137628
Alignment:
Q  304 cttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagca 403  Q
    |||||||  |||||| |||||| |  ||||||||||| || | ||||||||||||||||||  |||| |||| |||| |||| |||||  |||||||  |    
T  38137930 cttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaacta 38137831  T
Q  404 ccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatag 503  Q
    ||||  || ||||| | ||  |||| |||||| ||||| ||||| | |||  |||||||||| | |||||||||||| ||||| | ||||||||||| ||    
T  38137830 ccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagag 38137731  T
Q  504 tgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatactt 603  Q
    || || ||   || |  || ||||| ||   || ||||| |||||| |||||||||||||||||||| ||| |||| ||||| |||||||||||||||||    
T  38137730 tgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcacgctcggccttgagcttgtcgagcacccaagcatactt 38137631  T
Q  604 gaa 606  Q
    |||    
T  38137630 gaa 38137628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 45984200 - 45983972
Alignment:
Q  9 aaaattcaccaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaaccttgtagaaaccatgaattggtatc 108  Q
    |||| ||| |||||| |||||  ||||| |||||||| ||| |||||||||||||||| ||||||||||||||| |||||||| | | |||| ||||||     
T  45984200 aaaagtcagcaccattccagggttcaaggaaccagtctcaacacgtcccacaggcacagttccgattcctccaatcttgtagacatcctgaagtggtatt 45984101  T
Q  109 ctgagaggcttgtgaatttccctcatagacacaggcagttttaaatggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagg 208  Q
    |||||||||||||    |  ||||||      ||||   || |  ||||||| |||||| | |||||| ||||| | ||||||  |||| |||||||||     
T  45984100 ctgagaggcttgtctgatggcctcat------aggctcgttgatttggtcaatagcttcaagaagggttggacccttgtaccaatcaagattagtagagc 45984007  T
Q  209 gctcaaccaagttatctccctcaaaaccagagatg 243  Q
    |||||| ||||||||||||||||||||||||||||    
T  45984006 gctcaatcaagttatctccctcaaaaccagagatg 45983972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 538 - 621
Target Start/End: Original strand, 51292064 - 51292147
Alignment:
Q  538 agaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 621  Q
    ||||| ||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||| |||||||    
T  51292064 agaaatgtcaattgtgatacctctttcacgctcagccttgaacttgtcaagcacccaagcatacgtgaatgaacgcatgttcat 51292147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 304 - 621
Target Start/End: Complemental strand, 45983776 - 45983465
Alignment:
Q  304 cttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagca 403  Q
    |||||||  |||||| |||||| ||  ||||||||||| | |||||||||||||||||||||||||| |||||| | ||      ||   ||||||| ||    
T  45983776 cttgttgcagcagcagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgggtctgaccattcata------ccggcttcaaaacca 45983683  T
Q  404 ccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatag 503  Q
    |||| ||| ||||| | ||  |||| |||||| ||||| ||||| |  ||  | |||||||| | |||||||||||| ||||| | ||||||||||| ||    
T  45983682 ccagtagtggaatcaatgacgagaacagcacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacag 45983583  T
Q  504 tgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatactt 603  Q
    || ||  |   ||   ||| ||||| |||  ||  | || ||||||||| | |||||||||||| |||||| |||| |||||||||||||||||||||||    
T  45983582 tgcagttgtacttgtttgtctcaaacttcgacagggtaatgtcaattgtaacacctctttcacgttcagccttgagcttgtcaagcacccaagcatactt 45983483  T
Q  604 gaatgaacgcctgttcat 621  Q
    |||||||||| |||||||    
T  45983482 gaatgaacgcttgttcat 45983465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 50912297 - 50912383
Alignment:
Q  157 tcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    |||| |||||| |||||||||||||| | ||||||| |||||||||||||| ||||||  | |||||||||||||||||||||||||    
T  50912297 tcaagagcttcaataagggtgggacctttgtaccagtcaaggttagtagagcgctcaatgatgttatctccctcaaaaccagagatg 50912383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 621
Target Start/End: Complemental strand, 40034529 - 40034453
Alignment:
Q  545 tcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 621  Q
    |||||||| | ||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||| |||||||    
T  40034529 tcaattgtaacacctctttcacgctcagccttgagcttgtcaagtacccaagcatacttgaatgagcgcttgttcat 40034453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 38138225 - 38138136
Alignment:
Q  154 tggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    ||||||| |||||| | |||||||||||| |  |||||| |||||||||||||| | ||||  | |||||||||||||||||||||||||    
T  38138225 tggtcaagagcttcaagaagggtgggacccttataccagtcaaggttagtagagcgttcaatgatgttatctccctcaaaaccagagatg 38138136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 43044932 - 43045004
Alignment:
Q  171 aagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    |||||| ||||| | ||||||| ||||||| |||||| |||| | || |||||||||||||||||||||||||    
T  43044932 aagggttggacccttgtaccagtcaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatg 43045004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 43067059 - 43066987
Alignment:
Q  171 aagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    |||||| ||||| | ||||||| ||||||| |||||| |||| | || |||||||||||||||||||||||||    
T  43067059 aagggttggacccttgtaccagtcaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatg 43066987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 43083776 - 43083848
Alignment:
Q  171 aagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    |||||| ||||| | ||||||| ||||||| |||||| |||| | || |||||||||||||||||||||||||    
T  43083776 aagggttggacccttgtaccagtcaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatg 43083848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 3300649 - 3300738
Alignment:
Q  154 tggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    ||||||| ||| || | |||||| ||||| | ||||||| |||| || |||||| |||| | || |||||||||||||||||||||||||    
T  3300649 tggtcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatg 3300738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 421 - 610
Target Start/End: Complemental strand, 43076741 - 43076553
Alignment:
Q  421 gataagaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggt 520  Q
    ||||||||||||||||||||| ||||| | |||| | |||||||| | |||||||| | | ||||| | | ||||||||| |  | |||||   |||| |    
T  43076741 gataagaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcccgggacatcaatgacaacgcagcagttctttgtt 43076642  T
Q  521 gtttcaaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaa 610  Q
    || ||||| |||   | |||||  ||||| || |||||||||||||| |||||| |||| |||||||| | ||| |||||||||| ||||    
T  43076641 gtctcaaacttccagagagaaatctcaatggt-atacctctttcacgttcagccctgagcttgtcaaggatccaggcatacttgactgaa 43076553  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 43076914 - 43076842
Alignment:
Q  171 aagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    |||||| ||||| | |||||||  |||||| |||||| |||| | || |||||||||||||||||||||||||    
T  43076914 aagggttggacccttgtaccagttaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatg 43076842  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 7891456 - 7891374
Alignment:
Q  9 aaaattcaccaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaaccttgtaga 91  Q
    |||| ||| |||||| |||||| |||||  ||||| | |||  ||||||||||||||| |||| |||||||||| ||||||||    
T  7891456 aaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtaga 7891374  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 50912155 - 50912237
Alignment:
Q  9 aaaattcaccaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaaccttgtaga 91  Q
    |||| |||||||||| ||| || |||||  ||| ||| |||||||||||||||| ||| |||| ||| |||||| ||||||||    
T  50912155 aaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtaga 50912237  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 38138321 - 38138252
Alignment:
Q  52 cgtcccacaggcacatttccgattcctccaaccttgtagaaaccatgaattggtatcctgagaggcttgt 121  Q
    ||||||||||||||| |||| |||||||||| |||||||| | | |||| |||||  | |||||||||||    
T  38138321 cgtcccacaggcacagttccaattcctccaatcttgtagacatcctgaagtggtaatcggagaggcttgt 38138252  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 7891317 - 7891229
Alignment:
Q  154 tggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagat 242  Q
    ||||||| |||||| | ||||||||||||   ||||||  ||||||||| |||| ||||||  | ||||||||||||  ||||||||||    
T  7891317 tggtcaagagcttcaagaagggtgggacccgtgtaccaatcaaggttagaagagcgctcaatgatgttatctccctcgtaaccagagat 7891229  T

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Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 267 - 618
Target Start/End: Original strand, 1846570 - 1846921
Alignment:
Q  267 acctatccatggagtatgtaggtgttgtggcatccatcttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacg 366  Q
    |||||||| |||||||| | ||||| |||||||||||||||||   |||||| |||||| | |  |||||||||||| |||||||  || ||||||||      
T  1846570 acctatccttggagtatttgggtgtagtggcatccatcttgttacagcagcagatcatttgtgaaacaccaagagcgtaggcaagttgaacatgttcatt 1846669  T
Q  367 ggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgtta 466  Q
    |||| |||||| |||| ||||||||  ||||||| ||||||| ||||| || | ||||||||  ||||| ||||| | |||||  ||  | ||||||||     
T  1846670 ggtctgaccattcttacaaaaaccagcttcaaaaccaccaggtgtagagtcaatgataagaacggcacagtcagcttcggatgctccggtgatcatgttc 1846769  T
Q  467 tgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcac 566  Q
    | |||||||||||| ||||| | ||||||||||| |||| ||  |  ||| | ||| ||||| |||   | ||||| |||||||||||||||||||||||    
T  1846770 ttaatgaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggttgtctcaaacttccatagagaaatgtcaattgtgatacctctttcac 1846869  T
Q  567 gctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgtt 618  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  1846870 gctcggccttgagcttgtcaagcacccaagcatacttgaatgaacgcctgtt 1846921  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 535 - 610
Target Start/End: Complemental strand, 4787349 - 4787274
Alignment:
Q  535 catagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaa 610  Q
    |||||||| ||||||||||  |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  4787349 catagaaatgtcaattgtggcacctctttcacgctcacccttgagtttgtcaagcacccaagcatacttgaatgaa 4787274  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 425 - 611
Target Start/End: Original strand, 4620026 - 4620212
Alignment:
Q  425 agaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgttt 524  Q
    |||| |||||| ||||| |||||||  ||  | |||||||| | ||||||||| || ||||| | ||||||||||| |||| || ||   || | ||| |    
T  4620026 agaacagcacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttgtct 4620125  T
Q  525 caaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaac 611  Q
    |||| ||   || ||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  4620126 caaacttggacagagaaatgtcgattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatatttgaatgaac 4620212  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 4619604 - 4619693
Alignment:
Q  154 tggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    ||||||| |||||| | |||||||||||| ||||||||| |||| |||| |||  |||||| ||||||||||||||||||||||||||||    
T  4619604 tggtcaagagcttcaagaagggtgggaccctcgtaccagtcaagattagaagaacgctcaatcaagttatctccctcaaaaccagagatg 4619693  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 606
Target Start/End: Original strand, 4297922 - 4297990
Alignment:
Q  538 agaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaa 606  Q
    ||||| ||||||||||  |||||||||| | |||||  ||||||||||||| |||||||||||||||||    
T  4297922 agaaatgtcaattgtggcacctctttcatggtcagctttgagtttgtcaagtacccaagcatacttgaa 4297990  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 1846404 - 1846492
Alignment:
Q  154 tggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagat 242  Q
    ||||||| |||||| | ||||||||||||   ||||||| ||||||||| |||| ||||||  | ||||||||||||  ||||||||||    
T  1846404 tggtcaagagcttcaagaagggtgggacccgtgtaccagtcaaggttagaagagtgctcaatgatgttatctccctcgtaaccagagat 1846492  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 4297399 - 4297486
Alignment:
Q  156 gtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    ||||| |||||| | |||||||||||| | ||||||| |||  ||||| ||| | |||| |||||||||||| ||||||| |||||||    
T  4297399 gtcaatagcttcaagaagggtgggacccttgtaccagtcaaaattagtggagcggtcaatcaagttatctccgtcaaaactagagatg 4297486  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 1846265 - 1846347
Alignment:
Q  9 aaaattcaccaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaaccttgtaga 91  Q
    |||| ||| |||||| |||||| |||||  ||||| | |||  ||||||||||||||| |||| |||||||||| ||||||||    
T  1846265 aaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtaga 1846347  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 4619465 - 4619547
Alignment:
Q  9 aaaattcaccaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaaccttgtaga 91  Q
    |||| |||||| ||| |||||| |||||  ||| ||| ||| || ||||||||||||| |||| |||||||||| ||||||||    
T  4619465 aaaagtcaccatcattccaggtttcaagacaccggtctcaacacatcccacaggcacagttccaattcctccaatcttgtaga 4619547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 4787890 - 4787830
Alignment:
Q  33 caagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaaccttgtagaaa 93  Q
    |||| |||||||| | | ||||||||||| ||||  |||||||||||||| ||||||||||    
T  4787890 caagcaaccagtctcgacacgtcccacagacacaactccgattcctccaatcttgtagaaa 4787830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 332 - 606
Target Start/End: Original strand, 16349382 - 16349656
Alignment:
Q  332 acaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagag 431  Q
    |||||||||| | | ||| | ||||||||||||||| || ||||||  || |||| |||   | ||||| || ||||||| ||||| |||||||||||||    
T  16349382 acaccaagagagtaagcatggagagcatgttcacggatctgaccattattggaaataccggctccaaaaccagcaggagtggaatcaacgataagaagag 16349481  T
Q  432 cacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaatt 531  Q
    |||||||||| ||||||| |||| |||||||||| | |||||||||||| ||||| | |||||||||||||||| ||| |   || | ||| ||||||||    
T  16349482 cacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggttgtctcaaaatt 16349581  T
Q  532 ctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaa 606  Q
    |  |||||||  ||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||    
T  16349582 caacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtcaagaacccacgcatacttgaa 16349656  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 16349063 - 16349151
Alignment:
Q  155 ggtcaaaagcttcgataagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    |||||| |||||| | |||||||||||| | |||||   |||| || ||||||||||||||||||||||||||||||||||||||||||    
T  16349063 ggtcaagagcttcaagaagggtgggacccttgtacccatcaagttttgtagagggctcaaccaagttatctccctcaaaaccagagatg 16349151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 621
Target Start/End: Complemental strand, 7528907 - 7528843
Alignment:
Q  557 cctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 621  Q
    |||||||||||||||||| | ||||||||||| ||||| |||||||||||||||||| |||||||    
T  7528907 cctctttcacgctcagccttaagtttgtcaagaacccatgcatacttgaatgaacgcttgttcat 7528843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 347 - 500
Target Start/End: Complemental strand, 7519746 - 7519593
Alignment:
Q  347 gcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagagcacaatcagcgtggg 446  Q
    |||||||||||||| ||||||||| | ||||||||||| | ||||  ||||||| ||||||  || || || | |||||| | |||||||||||| ||||    
T  7519746 gcaagaagagcatgctcacgggtctgtccatccttagagataccagcttcaaaaccaccagtggtggagtcaatgataaggacagcacaatcagcctggg 7519647  T
Q  447 atgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatga 500  Q
    | |  ||| |||||||||| |  |||||||| | |||||| |  ||||||||||    
T  7519646 aggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatga 7519593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 500
Target Start/End: Complemental strand, 7529117 - 7528964
Alignment:
Q  347 gcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagagcacaatcagcgtggg 446  Q
    ||||||||||| || ||||||||| | ||||||||||| | ||||  ||||||| ||||||  || || || | |||||| |  ||||||||||| ||||    
T  7529117 gcaagaagagcgtgctcacgggtctgtccatccttagagataccagcttcaaaaccaccagtggtggagtcaatgataagcacggcacaatcagcctggg 7529018  T
Q  447 atgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatga 500  Q
    | |  ||| |||||||||| |  |||||||| | |||||| |  ||||||||||    
T  7529017 aggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatga 7528964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 39242617 - 39242545
Alignment:
Q  171 aagggtgggaccgtcgtaccagccaaggttagtagagggctcaaccaagttatctccctcaaaaccagagatg 243  Q
    ||||||||||| || ||||||| |||  ||||||||| |||||| |||||||||||| | |||||||||||||    
T  39242617 aagggtgggactgttgtaccagtcaatattagtagagcgctcaatcaagttatctccgttaaaaccagagatg 39242545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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