View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683-Insertion-5 (Length: 490)
Name: NF5683-Insertion-5
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Complemental strand, 4559626 - 4559143
Alignment:
| Q |
7 |
aagaactatcacaagtgacgaatacaagaaacaccaaagttcggtgtccccaaggaatagaaggggcaataattcaaccataaatgtgaaaccaacttcg |
106 |
Q |
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| T |
4559626 |
aagaactatcacaggtgacgaatacaagaaacaccaaagttcggtgtccccaaggaatagaaggggcaataattcaaccataaatgtgaaaccaacttcg |
4559527 |
T |
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| Q |
107 |
cgatttatgctagaaccgccgactcattggaagcaatctgatgcagaccaaaattatttgttacaagattcttcaaaggtaagtgattctaatgtaaaag |
206 |
Q |
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| T |
4559526 |
cgatttatgttagaaccgacgactccttggaagcaatctgatgcagaccaaaattatttgttacaagattcttcaaaggtaagtgattctaatgtaaaag |
4559427 |
T |
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| Q |
207 |
catcaaagccttctctttctgtatatggcgaaattgagaaaaggttgggggaactcgagttcaaaaagtccggaaaggatcttagagcacttaaacagat |
306 |
Q |
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| T |
4559426 |
catcaaaaccttctctttctgtatatggcgaaattgagaaaaggttgggggaactcgagttcaaaaagtccggaaaggatcttagagcacttaaacagat |
4559327 |
T |
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| Q |
307 |
tcttgaagcaatgcagagatttacagattcatcatctgacactggaagtaataatgctagtctaagtgaaaattctaaagttcaaagtccgagagtacag |
406 |
Q |
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| T |
4559326 |
tcttgaagcaatgcagagatttacagattcatcatctgacactggaagtaataatgctagtttaagtgaaaattctaaagttcaaagtccgagagtacaa |
4559227 |
T |
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| Q |
407 |
caaaaagactttccctcggattttgtcacggttgagcagtcgaattcaatcgaaggtagtaaattaccaattgtcatcacgaaa |
490 |
Q |
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| T |
4559226 |
caaaaagactttccctcggattttgtcacggttgagcagtcgaattcaatcgaaggtagtaaattaccaattgtcatcacgaaa |
4559143 |
T |
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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 230 - 326
Target Start/End: Complemental strand, 5024966 - 5024870
Alignment:
| Q |
230 |
tatggcgaaattgagaaaaggttgggggaactcgagttcaaaaagtccggaaaggatcttagagcacttaaacagattcttgaagcaatgcagagat |
326 |
Q |
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| T |
5024966 |
tatggtgaaattgaaaaaaggatggcggatctagagttcaaaaaatccggaaaggatcttagagcccttaaacagattcttgaagcaatgcacagat |
5024870 |
T |
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