View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683-Insertion-6 (Length: 432)
Name: NF5683-Insertion-6
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683-Insertion-6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 237 - 432
Target Start/End: Original strand, 4366050 - 4366245
Alignment:
| Q |
237 |
caccctatagatgttttagggaagggattctatgttaccttaggctctcttaagaagagattgatgaaatttccaaattgactttgatctctacaattcc |
336 |
Q |
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| T |
4366050 |
caccctatagatgttttaaggaagggattctatgttaccttaggctctcttaagaagagattgatgaaatttccaaattgactttgatctctacaattcc |
4366149 |
T |
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| Q |
337 |
aagcttccattctcgtgacttctcttcatctctaattacttcttctccttctaagttgctgcccacatagggagaattaaggggtttgaattttga |
432 |
Q |
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| T |
4366150 |
aagcttccattctcgtgacttctcttcatctctaattacttcttctccttctaagttgctgcccacatagggagaattaaggggtttgaattttga |
4366245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 4365890 - 4366051
Alignment:
| Q |
7 |
acaaagttcatatccggaaccaaacttcaagttcatctccgtaatgatttatttcagttataaactaactcatacccatcaaactcaattaaaaacaaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4365890 |
acaaagttcatatccggaaccaaacttcaagttcatatccgtaatgatttatttcagttataaactaactcatacccatcaaactcaattaaaaacaaca |
4365989 |
T |
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| Q |
107 |
tgcaaactaattatcattttgtatgcaataaaaatcagctcacaacaacaaacattcaatca |
168 |
Q |
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| T |
4365990 |
tgcaaactaattatcattttgtatgcaacaaaaatcatctcataacaacaaacattcaatca |
4366051 |
T |
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