View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683_high_10 (Length: 274)
Name: NF5683_high_10
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 14389239 - 14388986
Alignment:
| Q |
1 |
gatatctcagttccaatcacttatcataagaagtaaaatatgaaaatgaaaggagaaaataattacaaggtannnnnnnagataaattgtagggtaagca |
100 |
Q |
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| T |
14389239 |
gatatctcagttccaatcacttatcataagaagtaaaatatgaaaatgaaaggagaaaataattacaaggtatttttttagataaattgtagggtaagca |
14389140 |
T |
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| Q |
101 |
tcaagaattgtcattattcttgaagcaggttccttacctgatgcattatgtatctttattcttccattacttagctccattcgaccagatgctggcgaga |
200 |
Q |
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| T |
14389139 |
tcaagaattgtcattattcttgaagcaggttccttacctgatgcattatgtatctttattcttcca-tacttagctccattcggccagatgctggcgaga |
14389041 |
T |
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| Q |
201 |
catttgcatttactaaccgctcacttgataaatcttgcttattgactccggaaaa |
255 |
Q |
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| T |
14389040 |
cattagcatttactaaccgctcactagataaatcttgcttattgactccggaaaa |
14388986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 16025902 - 16026112
Alignment:
| Q |
29 |
agaagtaaaatatgaaaatgaaaggagaaaataattacaaggtannnnnnnagataaattgtagggtaagcatcaagaattgtcattattcttgaagcag |
128 |
Q |
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| T |
16025902 |
agaagtaacatatgaatatgaaaggagaaaataattacaaggtattcttttagatcaat----gggtaagcatcaagc---gtcttaattcttgaaccaa |
16025994 |
T |
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| Q |
129 |
gttccttacctgatgcattatgtatctttattcttccattacttagctccattcgaccagatgctggcgagacatttgcatttactaaccgctcacttga |
228 |
Q |
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| T |
16025995 |
gttccgtacctgatgtgttatctatctctgttcttccattacttagctccattc---cagatgctggcgagacattagcattctctaaccgctcaccaga |
16026091 |
T |
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| Q |
229 |
taaatcttgcttattgactcc |
249 |
Q |
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| T |
16026092 |
gagatcttgcttattgactcc |
16026112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 26204492 - 26204577
Alignment:
| Q |
94 |
gtaagcatcaagaattgtcattattcttgaagcaggttccttacctgatgcattatgtatctttattcttccattacttagctcca |
179 |
Q |
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| T |
26204492 |
gtaagcatcaagtattgtcatcattcttttatcaagttcccaacctgatgcattatttatgtttgttcttccgttactttgctcca |
26204577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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