View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683_high_11 (Length: 268)
Name: NF5683_high_11
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 14111950 - 14111711
Alignment:
| Q |
12 |
atgaacaccaaacacaacact-acagtgacatgtttaaatcaatagtaatttgagaaaagaaattaattaaatgtaatcatatttgtgagggtgtcatgt |
110 |
Q |
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| T |
14111950 |
atgaacaccaaacacaacactgacagtgacatgtttaaaccaatagtaatttgagaaaagaaattaattaaatgtaatcatatttgtgacggtgtcatgt |
14111851 |
T |
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| Q |
111 |
caatgtcagacaccgacatgtcttcaatatgaagtgtttgtgctacagaggtaatagatacactacccactttcagaaacatgaataagagtatattgta |
210 |
Q |
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| T |
14111850 |
caatgtcagacactaacatgtcctcaatatgaagtgttcgtgctacagaggtaatacatacactacccactttcagaaacatgaataagagtatattgta |
14111751 |
T |
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| Q |
211 |
tagaacagatctgactttgtagattagactcaaactttca |
250 |
Q |
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| T |
14111750 |
tagaacagatctgactttgtagattagactcaaactttca |
14111711 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 6252541 - 6252501
Alignment:
| Q |
57 |
taatttgagaaaagaaattaattaaatgtaatcatatttgt |
97 |
Q |
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| T |
6252541 |
taatttgagaaaataatttaattaaatgtaatcacatttgt |
6252501 |
T |
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