View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5683_high_16 (Length: 215)
Name: NF5683_high_16
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 15379200 - 15379381
Alignment:
| Q |
16 |
cacattcttcattaaaaaatattaattaacactcttacattagttaattaaatatatgctaactcatgttttgtccttagctatgtactattacattata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15379200 |
cacattcttcattaaaaaatattaattaacactcttacattagttaatttaatttatgttaactcatgttttgtccttagctatgtactattacattata |
15379299 |
T |
|
| Q |
116 |
cttgacattactttataaatttcttataatttaatataggtagaaggtgtcaaatacatgtttgaacccataacaattagaa |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15379300 |
cttgacattactttataaatttctaataatttaatataggtagaaggtgtcaaatacatgtttgaacccataacaattagaa |
15379381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 7706853 - 7706794
Alignment:
| Q |
51 |
tacattagttaattaaatatatgctaactcatgttttgtccttagctatgtactattaca |
110 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| | ||||| |||||||| |||||||||| |
|
|
| T |
7706853 |
tacattagttaatttaatttatgctaactcaagctttgtacttagctacatactattaca |
7706794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University