View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5683_high_6 (Length: 357)
Name: NF5683_high_6
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 31284807 - 31285151
Alignment:
| Q |
1 |
tttttatttgttcaccaacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatagcttttaatcagacaccagacttgtcaagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31284807 |
tttttatttgttcaccaacttatcttgttgggcatgaatagatatgaatacaagcttactgggaagatagcttttaatcagacaccagacttgtcaagtg |
31284906 |
T |
|
| Q |
101 |
attgtagtcagaggtactctacttccctttaatcttgttttgcctttaatttatgtacctaaatcattcaatcttaaagcttaaatgggaaccacaattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31284907 |
attgtagtcagaggtactctacttcccttgaatcttgttttgcctttaatttatgtacctaaatcattcaatcttaaagcttaaatgggaaccacaattt |
31285006 |
T |
|
| Q |
201 |
atatattcttaaactagaattagttttttataactcaaaacaatgaaaattttataatataattatcaatacatgaatgtgattgtcatgttgttgtttg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31285007 |
atatattcttaaactagaattagttttttataactcaaaacaatgaaaattttataatataattatcaatacatgaatgtgattgtcatgttgttgtttg |
31285106 |
T |
|
| Q |
301 |
gactaacatatctagttgaacatgaacagatatgaatatgatttt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31285107 |
gactaacatatctagttgaacatgaacagatatgaatatgatttt |
31285151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 22 - 345
Target Start/End: Original strand, 26623537 - 26623863
Alignment:
| Q |
22 |
atcttgttgggcatgaatagatatgaatacaagcttgctgggaagatagcttttaatcagacaccagacttgtcaagtga---ttgtagtcagaggtact |
118 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| || |||||||| || || | |||||||| |||| |||||| || ||||||||| |||||| |
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|
| T |
26623537 |
atcttgttgg-cattaatagatatgaatacaagcttactaggaagataactcttgaccagacaccggactcgtcaagcgaccattgtagtcaagggtact |
26623635 |
T |
|
| Q |
119 |
ctacttccctttaatcttgttttgcctt---taatttatgtacctaaatcattcaatcttaaagcttaaatgggaaccacaatttatatattcttaaact |
215 |
Q |
| |
|
||||||| ||| |||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
26623636 |
ctacttcacttgaatcttgttttgccttctttattttatattcctaaatcattcaatcttaaagcttaaatgggaaaaacaatttatatattcttaaact |
26623735 |
T |
|
| Q |
216 |
agaattagtttttt-ataactcaaaacaatgaaaattttataatataattatcaatacatgaatgtgattgtcatgttgttgtttggactaacatatcta |
314 |
Q |
| |
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| |||||||||||| ||||||||| |||| ||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||| |
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|
| T |
26623736 |
aaaattagtttttttataactcaa--caattaaaattt-ataatataattattaatacatgaatgttattgtcatgttgatgtttctactaacatatcta |
26623832 |
T |
|
| Q |
315 |
gttgaacatgaacagatatgaatatgatttt |
345 |
Q |
| |
|
| || |||||||||||||||||||||||||| |
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|
| T |
26623833 |
gctggacatgaacagatatgaatatgatttt |
26623863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 22 - 345
Target Start/End: Original strand, 26729514 - 26729840
Alignment:
| Q |
22 |
atcttgttgggcatgaatagatatgaatacaagcttgctgggaagatagcttttaatcagacaccagacttgtcaagtga---ttgtagtcagaggtact |
118 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| || |||||||| || || | |||||||| |||| |||||| || ||||||||| |||||| |
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|
| T |
26729514 |
atcttgttgg-cattaatagatatgaatacaagcttactaggaagataactcttgaccagacaccggactcgtcaagcgaccattgtagtcaagggtact |
26729612 |
T |
|
| Q |
119 |
ctacttccctttaatcttgttttgcctt---taatttatgtacctaaatcattcaatcttaaagcttaaatgggaaccacaatttatatattcttaaact |
215 |
Q |
| |
|
||||||| ||| |||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
26729613 |
ctacttcacttgaatcttgttttgccttctttattttatattcctaaatcattcaatcttaaagcttaaatgggaaaaacaatttatatattcttaaact |
26729712 |
T |
|
| Q |
216 |
agaattagtttttt-ataactcaaaacaatgaaaattttataatataattatcaatacatgaatgtgattgtcatgttgttgtttggactaacatatcta |
314 |
Q |
| |
|
| |||||||||||| ||||||||| |||| ||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||| |
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|
| T |
26729713 |
aaaattagtttttttataactcaa--caattaaaattt-ataatataattattaatacatgaatgttattgtcatgttgatgtttctactaacatatcta |
26729809 |
T |
|
| Q |
315 |
gttgaacatgaacagatatgaatatgatttt |
345 |
Q |
| |
|
| || |||||||||||||||||||||||||| |
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|
| T |
26729810 |
gctggacatgaacagatatgaatatgatttt |
26729840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 26647031 - 26647084
Alignment:
| Q |
17 |
aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag |
70 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
26647031 |
aacttatcttgtgggacatgaatagatatgaatacaagtttattgggaagatag |
26647084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 26752999 - 26753052
Alignment:
| Q |
17 |
aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag |
70 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
26752999 |
aacttatcttgtgggacatgaatagatatgaatacaagtttattgggaagatag |
26753052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 26802998 - 26803035
Alignment:
| Q |
17 |
aacttatcttgttgggcatgaatagatatgaatacaag |
54 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26802998 |
aacttatcttgttggacatgaatagatatgaatacaag |
26803035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 27610750 - 27610716
Alignment:
| Q |
17 |
aacttatcttgttgggcatgaatagatatgaatac |
51 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
27610750 |
aacttatcttattgggcatgaatagatatgaatac |
27610716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 25539095 - 25539132
Alignment:
| Q |
17 |
aacttatcttgttgggcatgaatagatatgaatacaag |
54 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
25539095 |
aacttatcttattggacatgaatagatatgaatacaag |
25539132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 27592651 - 27592598
Alignment:
| Q |
17 |
aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag |
70 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
27592651 |
aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag |
27592598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 27604334 - 27604281
Alignment:
| Q |
17 |
aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag |
70 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
27604334 |
aacttatcttattggacatgaatagatatgaatacgagcttattggaaagatag |
27604281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 27677250 - 27677197
Alignment:
| Q |
17 |
aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag |
70 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
27677250 |
aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag |
27677197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 27679502 - 27679555
Alignment:
| Q |
17 |
aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag |
70 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
27679502 |
aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag |
27679555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 27706034 - 27705981
Alignment:
| Q |
17 |
aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag |
70 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
27706034 |
aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag |
27705981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 18679185 - 18679149
Alignment:
| Q |
18 |
acttatcttgttgggcatgaatagatatgaatacaag |
54 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
18679185 |
acttatcttattggacatgaatagatatgaatacaag |
18679149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 18723710 - 18723674
Alignment:
| Q |
18 |
acttatcttgttgggcatgaatagatatgaatacaag |
54 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
18723710 |
acttatcttattggacatgaatagatatgaatacaag |
18723674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 18731129 - 18731093
Alignment:
| Q |
18 |
acttatcttgttgggcatgaatagatatgaatacaag |
54 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
18731129 |
acttatcttattggacatgaatagatatgaatacaag |
18731093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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