View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683_low_1 (Length: 801)
Name: NF5683_low_1
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 14 - 785
Target Start/End: Complemental strand, 4560391 - 4559620
Alignment:
| Q |
14 |
caaaggtaaagataactatagttttactctttgaaaaatgttggcaaaaaccattaataacatatgattatgaatgcaggaaaagaatcaaaagattgca |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4560391 |
caaaggtaaagataactatagttttactatttgaaaaatgttggcaaaaaccattaataacatatgattatgaatgcaggaaaagaatcaaaagattgca |
4560292 |
T |
|
| Q |
114 |
aaagagaagcaacaattctccacagaatcatcagtaacttctgtctcttcatcatcttgttcatctagcatgacatcctatgaatttaacggaataatta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4560291 |
aaagagaagcaacaattctccacagaatcatcagtaacttctgtctcttcatcatcttgttcatctagcatgacatcctatgaatttaacggaataatta |
4560192 |
T |
|
| Q |
214 |
agacagaatcattgtcaaccaaacaaattcaaatttcaagaaatccacattcaaaagtatcagttgatttatttgatattgtcaaagattcaatgcatag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4560191 |
agacagaatcattgtcaaccaaacaaattcaaatttcaagaaatccacattcaaaagtatcagttgatttctttgatattgtcaaagattcaatgcatag |
4560092 |
T |
|
| Q |
314 |
agaagctaaagggttatatgtgaaaacattaaccaaacaagaaataaagggtcagggttattcattgaaccaacacatagactctccaaggcctgttata |
413 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4560091 |
agaagctaaagagttatatgtgaaaacattaaccaaacaagaaataaagggtcatggttattcattgaaccaacacatagactctccaaggcctgttata |
4559992 |
T |
|
| Q |
414 |
gtttcgaaggaaccattacatactctttcgaggtcnnnnnnngcacattgggactctccgcggctctcttatgatgcattgaaatctactacaaggtata |
513 |
Q |
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| T |
4559991 |
gtttcgaaggaaccattacatactctttcgaggtcaaaaaaagcacattgggactctccgcgactctcttatgatgcattgaaatctactacaaggtata |
4559892 |
T |
|
| Q |
514 |
aggagcttcctaggctttccttggatagcaagcaaggatccattcgagggattgacggaggaaacaaggctcacaacgtatctaatggctcacaaagagg |
613 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |
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| T |
4559891 |
aggagcttcctaggctttccttggacagcaagcaaggatccattcgagggattgacgaaggaaacaaggctcgcaacgtgtctaatggctcgcaaagagg |
4559792 |
T |
|
| Q |
614 |
atatgagaggaactcgagcacaatgcttgataaaattgaagaaccagaaacatcgaaaagatcgtcatgtgttgtggctaagttgatgggactagaagct |
713 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
4559791 |
atatgagaggaactcgagcgcaatgcttgataaaattcaagaaccagaaacatcgaaaagatcgtccagtgttgtggttaagttgatgggactagaagct |
4559692 |
T |
|
| Q |
714 |
cgcccggactcgacgcaaactggtcggacttctgtctgctccaccgataaaaacgagatcatagaaagaact |
785 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4559691 |
ctcccggactcgacgcaaactggtcggacttctgtctgttccaccgataaaaacgagatcatagaaagaact |
4559620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 5025835 - 5025723
Alignment:
| Q |
82 |
tatgaatgcaggaaaagaatcaaaagattgcaaaagagaagcaacaattctccacagaatc---atcagtaacttctgtctcttcatcatcttgttcatc |
178 |
Q |
| |
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||||| |||||| ||||||| ||| || ||| |||||| ||||||| |||||||||||| ||||| |||||| | ||||| || ||||||||||| |
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| T |
5025835 |
tatgattgcaggcaaagaatgtgaaggttccaagagagaatcaacaatcctccacagaatcatcatcaggaacttccatgtcttcgtcgtcttgttcatc |
5025736 |
T |
|
| Q |
179 |
tagcatgacatcc |
191 |
Q |
| |
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||||||| ||||| |
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| T |
5025735 |
tagcatgtcatcc |
5025723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 712
Target Start/End: Complemental strand, 5025269 - 5025208
Alignment:
| Q |
651 |
gaagaaccagaaacatcgaaaagatcgtcatgtgttgtggctaagttgatgggactagaagc |
712 |
Q |
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||||||||||||| | |||||| | ||| |||||||||| |||||||||||||||||||| |
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| T |
5025269 |
gaagaaccagaaagtgctaaaagaccatcaagtgttgtggcaaagttgatgggactagaagc |
5025208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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