View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683_low_10 (Length: 309)
Name: NF5683_low_10
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 9733115 - 9733365
Alignment:
| Q |
17 |
aaaagggtcgctcaaatccatcttttttatcaaaattagacaaagaacaacacaatattaaaaattgctnnnnnnncacaagcatttcacttttgtgtat |
116 |
Q |
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| T |
9733115 |
aaaagggtcgctcaaattcatattttttatcaaaattagacaaagaacaacacaatattaaaaattgctaaaaaaacacaagcatttcacttttgtgtat |
9733214 |
T |
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| Q |
117 |
gaactttgaaagtaaccaaagagagtaataaaatatgaaattccaaccacaaattattgacctttttcttgttgagaacttcctcctggggcccttagat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9733215 |
gaactttgaaagtaaccaaagagagtaataaaatatgaaattccaaccacaaattattgacctttttcttgttgagaacttcctcctgggacccttagat |
9733314 |
T |
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| Q |
217 |
tacactcaagatgtgccattcaccaacaacaaagaacaaaacaacaactat |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9733315 |
tacactcaagatgtgccattcaccaacaacaaagaacaaaacaacaactat |
9733365 |
T |
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