View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683_low_16 (Length: 233)
Name: NF5683_low_16
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683_low_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 10443042 - 10443259
Alignment:
| Q |
16 |
aatagaaggcaagcaaatgagatggctaatactcttcttgcaagggtagcttcatcatagctagttccaacatcttcattgatgtatcgacatgtataac |
115 |
Q |
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| T |
10443042 |
aatagaagacaagcaaatgagatggctaatactcttcttgcaagggtagcttcatcatcgctagttccaacatcttcattgatgtatcgacatgtataac |
10443141 |
T |
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| Q |
116 |
catattattatgaatgaatgataccttttaatgaaggaaggattcaattgaagatctaccttttaacgatacaagagagaccattttaattattcatcta |
215 |
Q |
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| T |
10443142 |
catattattatgaatgaatgataccttttaacgaaggaaggattcaattgaagatctaccttttaacgatacaagagagaccattttaattagtcatcta |
10443241 |
T |
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| Q |
216 |
aaatcatttcaccatcac |
233 |
Q |
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| T |
10443242 |
aaatcatttcaccatcac |
10443259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 4469409 - 4469376
Alignment:
| Q |
200 |
tttaattattcatctaaaatcatttcaccatcac |
233 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
4469409 |
tttaattattcatccaaaatcatttcaccatcac |
4469376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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