View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5683_low_17 (Length: 231)

Name: NF5683_low_17
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5683_low_17
NF5683_low_17
[»] chr2 (3 HSPs)
chr2 (4-215)||(2336116-2336327)
chr2 (26-196)||(2312995-2313155)
chr2 (123-215)||(2343646-2343738)
[»] chr4 (1 HSPs)
chr4 (124-212)||(36800204-36800292)
[»] chr5 (1 HSPs)
chr5 (144-213)||(12969834-12969903)
[»] scaffold1031 (1 HSPs)
scaffold1031 (147-212)||(2385-2450)
[»] chr8 (5 HSPs)
chr8 (147-212)||(217014-217079)
chr8 (147-212)||(693574-693639)
chr8 (147-212)||(697783-697848)
chr8 (147-212)||(730637-730702)
chr8 (147-212)||(854532-854597)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 2336116 - 2336327
Alignment:
Q  4 tatagcatgtggggcttttaaccaattttggacatgtaatctatgtttttgtgaaatgttgnnnnnnngtcatgttgtttccctcttctgttagtgttgc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  2336116 tatagcatgtggggcttttaaccaattttggacatgtaatctatgtttttgtgaaatgttgtttttttgtcatgttgtttccctcttctgttagtgttgc 2336215  T
Q  104 ttatagataatgttgttttttgttttgtaggttacttgctatattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2336216 ttatagataatgttgttttttgttttgtaggttacttgctatattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggt 2336315  T
Q  204 gttaatggaagt 215  Q
    ||||||||||||    
T  2336316 gttaatggaagt 2336327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 2312995 - 2313155
Alignment:
Q  26 caattttggacatgtaatctatgtttttgtgaaatgttgnnnnnnngtcatgttgtttccctcttctgttagtgttgcttatagataatgttgttttttg 125  Q
    |||||||||||||||||||| |||||||||||| |||||        |  | ||||||||| ||||| ||||||||| |||||    |||||||||||||    
T  2312995 caattttggacatgtaatctttgtttttgtgaagtgttgcc------tttttttgtttcccccttctattagtgttggttata----atgttgttttttg 2313084  T
Q  126 ttttgtaggttacttgctatattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2313085 ttttgtaggttacttgctatattttgtgtgattaatttgttaaactatttggatctaggagcaatagctag 2313155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 2343646 - 2343738
Alignment:
Q  123 ttgttttgtaggttacttgctatattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatggaagt 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  2343646 ttgttttgtaggttacttggtatattttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaagt 2343738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 36800292 - 36800204
Alignment:
Q  124 tgttttgtaggttacttgctatattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 212  Q
    |||| ||||| ||||| ||||||||||||||||||||  |||| ||||||||||| | |||||||||||||||||||||||||||||||    
T  36800292 tgttgtgtagattactggctatattttgtgtgattaacatgttgaactatttggaccgaggagcaatagctagcaatggtgttaatgga 36800204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 12969903 - 12969834
Alignment:
Q  144 atattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatggaa 213  Q
    ||||||||| | || |||||| | || ||| |||||| |||||| |||||||||||||||||||||||||    
T  12969903 atattttgtattataaatttgatcaattatgtggatcgaggagctatagctagcaatggtgttaatggaa 12969834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 2450 - 2385
Alignment:
Q  147 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 212  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  2450 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 2385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 217014 - 217079
Alignment:
Q  147 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 212  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  217014 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 217079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 693574 - 693639
Alignment:
Q  147 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 212  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  693574 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 693639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 697783 - 697848
Alignment:
Q  147 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 212  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  697783 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 697848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 730637 - 730702
Alignment:
Q  147 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 212  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  730637 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 730702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 854532 - 854597
Alignment:
Q  147 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 212  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  854532 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 854597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University