View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5683_low_2 (Length: 746)

Name: NF5683_low_2
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5683_low_2
NF5683_low_2
[»] chr7 (1 HSPs)
chr7 (26-728)||(5468486-5469182)
[»] chr5 (9 HSPs)
chr5 (585-690)||(33823144-33823249)
chr5 (585-671)||(33750178-33750264)
chr5 (585-690)||(33867306-33867411)
chr5 (585-705)||(33763708-33763828)
chr5 (585-695)||(33904850-33904960)
chr5 (585-681)||(33736438-33736534)
chr5 (597-690)||(33698932-33699025)
chr5 (585-706)||(33680386-33680507)
chr5 (64-144)||(14319158-14319237)
[»] scaffold0001 (1 HSPs)
scaffold0001 (585-686)||(149252-149353)
[»] scaffold0247 (1 HSPs)
scaffold0247 (585-681)||(19854-19950)
[»] scaffold0193 (1 HSPs)
scaffold0193 (585-681)||(23302-23398)
[»] scaffold0023 (1 HSPs)
scaffold0023 (585-705)||(88869-88989)
[»] chr8 (3 HSPs)
chr8 (595-706)||(21306326-21306437)
chr8 (93-176)||(9590394-9590476)
chr8 (216-266)||(9590532-9590578)
[»] chr2 (1 HSPs)
chr2 (79-120)||(38572135-38572176)


Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 26 - 728
Target Start/End: Complemental strand, 5469182 - 5468486
Alignment:
Q  26 taagaaataatattgtttctctcatgaaagcataggaaaatatttatttatactataaagcaaaacaatgactttgtaagcacaataactaataaagcat 125  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  5469182 taagaaataacattgtttctctcaagaaagcataggaaaatatttctttatactataaagcaaaacaatgactttgtaagcacaataactaa---agcat 5469086  T
Q  126 tctgagaaaaatcaaaattcaaaatcagaattggagattcaacaaagaaaatcatcagagttgg--------------gatacatactaatgatgcgaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||    
T  5469085 tctgagaaaaatcaaaattcaaaatcagaattggagattcaacaaagaaaatcatcagagttggatattcagaattgggatacatactaatgatgcgaca 5468986  T
Q  212 tttatacatcaaacattatatcttaattagaggtaaatgcttatatttttcacttatttgtctttgtagtcgattcttacatgccagaacgcgcgcgggc 311  Q
    |||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |    
T  5468985 tttatacatcaaacattatatctta----gagataaatgcttatatttttcacttatttgtctttgtagtcgattctcacatgccagaacgcgcgcg--c 5468892  T
Q  312 gtacacacactttttgagtaatattctagtatggctatagtcata----gtcatacggtggatccatccctaccggtttgacattgattacttttcagtt 407  Q
    ||||||||||||||||||||||| |||||| || |||||||||||    |||||||||||||||||||||||||||||||||||||||||              
T  5468891 gtacacacactttttgagtaatactctagtgtg-ctatagtcatactaagtcatacggtggatccatccctaccggtttgacattgatta---------- 5468803  T
Q  408 tttatttgggctgttttggatataagcataatgctagcaaagttttatcaaaagaaataacattttaacaagacatgcagaaaagaaaattaaacatggt 507  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5468802 ----tttgggctgttttggatataagcataatgctagcaaagttttatcaaaagaaataacattttaacaagacatgcagaaaagaaaattaaacatggt 5468707  T
Q  508 taatttacatttggttctatatgtgtttaatttatatcatttggtagaagaagtggcattcaattcattatacctgaacctgctctttgaggaattaaat 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5468706 taatttacatttggttctatatgtgtttaatttatatcatttggtagaagaagtggcattcaattcattatacctgaacctgctctttgaggaattaaat 5468607  T
Q  608 gccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttcacacctatggtattatccatatc 707  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5468606 gccattttccttcaccatacttgttaatgtaagccttgagtaagttgtcttcctcgtatgtccatgcaccttttttcacgcctatggtattatccatatc 5468507  T

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Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 585 - 690
Target Start/End: Original strand, 33823144 - 33823249
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 684  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| ||    
T  33823144 acctgttcttttgggaattaaatgccattttccttcaccatacttgtgaatgtaagccttgagtaagttgtcttcctcatatgtccatgcaccttttctc 33823243  T
Q  685 acacct 690  Q
    | ||||    
T  33823244 aaacct 33823249  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 585 - 671
Target Start/End: Original strand, 33750178 - 33750264
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtcca 671  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||||||  |||||||    
T  33750178 acctgctcttttaggaattaaatgccattttccttcaccatacttgttaatataagctttgagtaacttgtcttcctcagatgtcca 33750264  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 585 - 690
Target Start/End: Original strand, 33867306 - 33867411
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 684  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| |||||||||||||||||| ||    
T  33867306 acctgctctttgtggaactaaatgccattttccttcaccatacttctgcatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctc 33867405  T
Q  685 acacct 690  Q
    ||||||    
T  33867406 acacct 33867411  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 585 - 705
Target Start/End: Original strand, 33763708 - 33763828
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 684  Q
    ||||||||| || ||||  ||||||||||||||||||||||||||||||||| ||||||||||||   | |||||||| |||||||| |||||| |||||    
T  33763708 acctgctctctgtggaacaaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacctcttttc 33763807  T
Q  685 acacctatggtattatccata 705  Q
    ||  || | ||||||||||||    
T  33763808 actgctctcgtattatccata 33763828  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 585 - 695
Target Start/End: Original strand, 33904850 - 33904960
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 684  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| |||||||||||||||||| ||    
T  33904850 acctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctc 33904949  T
Q  685 acacctatggt 695  Q
    || ||| ||||    
T  33904950 acgcctctggt 33904960  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 585 - 681
Target Start/End: Original strand, 33736438 - 33736534
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 681  Q
    |||||||||||||| || ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| ||||||||||||||||||    
T  33736438 acctgctctttgagaaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt 33736534  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 597 - 690
Target Start/End: Original strand, 33698932 - 33699025
Alignment:
Q  597 aggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttcacacct 690  Q
    ||||| |||||||||||||||||||||||||||||  ||| ||||||||||||   | |||||||| |||||||||||||||||| ||| ||||    
T  33698932 aggaactaaatgccattttccttcaccatacttgtggatgcaagccttgagtagattatcttcctcatatgtccatgcaccttttctcaaacct 33699025  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 585 - 706
Target Start/End: Original strand, 33680386 - 33680507
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 684  Q
    ||||||||||| ||||| |||||||||||| ||||||||||| || | |||  |  |||||||||   |||| ||||| |||||||||||||||||| ||    
T  33680386 acctgctcttttaggaactaaatgccatttcccttcaccatatttttgaatacagtccttgagtagattgtcctcctcatatgtccatgcaccttttctc 33680485  T
Q  685 acacctatggtattatccatat 706  Q
    | |||| |||| || |||||||    
T  33680486 aaacctctggtcttttccatat 33680507  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 14319158 - 14319237
Alignment:
Q  64 aatatttatttatactataaagcaaaacaatgactttgtaagcacaataactaataaagcattctgagaaaaatcaaaatt 144  Q
    ||||||| || || |||||||  | |||||||||||||||||||||||||||||| ||||||||| || ||||||||||||    
T  14319158 aatatttcttcatcctataaattagaacaatgactttgtaagcacaataactaat-aagcattctcaggaaaatcaaaatt 14319237  T

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Target: scaffold0001 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 585 - 686
Target Start/End: Original strand, 149252 - 149353
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 684  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||   | ||||||||||||||||| ||||||||| ||    
T  149252 acctgctctttgaggaactaaatgccattttccttccccatacttgtcaatgcaagccttgagtagcttatcttcctcgtatgtccaggcaccttttctc 149351  T
Q  685 ac 686  Q
    ||    
T  149352 ac 149353  T

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Target: scaffold0247 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 585 - 681
Target Start/End: Complemental strand, 19950 - 19854
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 681  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||||  |||||||||||||||  || ||||||| || ||||||||||||||||||    
T  19950 acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt 19854  T

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Target: scaffold0193 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 585 - 681
Target Start/End: Complemental strand, 23398 - 23302
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 681  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||||  |||||||||||||||  || ||||||| || ||||||||||||||||||    
T  23398 acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt 23302  T

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Target: scaffold0023 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 585 - 705
Target Start/End: Complemental strand, 88989 - 88869
Alignment:
Q  585 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 684  Q
    |||||||||| |||||| || |||||||||||||| |||||||||||||||| | |||||||||||| | ||||| || |  ||||| | ||||||||||    
T  88989 acctgctcttcgaggaactagatgccattttccttgaccatacttgttaatgcatgccttgagtaagttatcttcttcattcgtccaggtaccttttttc 88890  T
Q  685 acacctatggtattatccata 705  Q
    || ||  ||||||||||||||    
T  88889 acgccactggtattatccata 88869  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 595 - 706
Target Start/End: Original strand, 21306326 - 21306437
Alignment:
Q  595 tgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagct-gtcttcctcgtatgtccatgcaccttttttcacacctatg 693  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||| ||||||||||| ||||  ||||||| ||| |||||||| |||||| ||||||||  |    
T  21306326 tgaggaactaaattccattttccttcaccgtacgtgttaatgcaagccttgagt-agctcatcttccttgtaagtccatgcgccttttctcacacctccg 21306424  T
Q  694 gtattatccatat 706  Q
    ||||| |||||||    
T  21306425 gtattctccatat 21306437  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 9590394 - 9590476
Alignment:
Q  93 atgactttgtaagcacaataactaataaagcattctgagaaaaatcaaaattcaaaatcagaattggagattcaacaaagaaaa 176  Q
    ||||||||| ||||| ||| ||||||| |  ||||| | ||||||| ||||||| |||||||||||| ||||||||||||||||    
T  9590394 atgactttgaaagcaaaatgactaatacat-attctaaaaaaaatccaaattcagaatcagaattggggattcaacaaagaaaa 9590476  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 9590532 - 9590578
Alignment:
Q  216 tacatcaaacattatatcttaattagaggtaaatgcttatatttttcactt 266  Q
    |||||||||||||||| ||||    ||||||||||||||||||||||||||    
T  9590532 tacatcaaacattatagctta----gaggtaaatgcttatatttttcactt 9590578  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 38572135 - 38572176
Alignment:
Q  79 tataaagcaaaacaatgactttgtaagcacaataactaataa 120  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  38572135 tataaagcaaaacagtgactttgtaagtacaataactaataa 38572176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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