View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683_low_3 (Length: 598)
Name: NF5683_low_3
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 16 - 582
Target Start/End: Complemental strand, 23031822 - 23031256
Alignment:
| Q |
16 |
atgcacacagaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcatagcaacggttgccttcgcagccatcttcactgtcccaggcc |
115 |
Q |
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| T |
23031822 |
atgcacacagaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcatagcaacggttgccttcgcagccatcttcactgtcccaggcc |
23031723 |
T |
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| Q |
116 |
aattcgtggatgatccnnnnnnngttcgtaacggaaaatcccttggcgaagcaaacatagcttcagaacctgcgtttctagtattcatcgtgtttgattc |
215 |
Q |
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| T |
23031722 |
aattcgtggatgatccaaaaaaagttcgtaaaggaaaatcccttggcgaagcaaacatagcttcagaacctgcgtttctagtattcatcgtgtttgattc |
23031623 |
T |
|
| Q |
216 |
ggttgcgcttttcatctccctcgcggttgtggtggttcaaacatcaatagttgttgttgaaagcaaagcaaagaaacaaatgatggctattattaacaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23031622 |
ggttgcgcttttcatctccctcgcggttgtggtggttcaaacatcaatagttgttgttgaaagcaaagcaaagaaacaaatgatggctattattaacaaa |
23031523 |
T |
|
| Q |
316 |
ctaatgtgggtagcttgtgtgcttatatctgtgtcatttttggctttgtcatttttagttgtgggtaaaaaacaaagatggcttgcaattggggtaacta |
415 |
Q |
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| T |
23031522 |
ctaatgtgggtagcttgtgtgcttatatctgtgtcatttttggctttgtcatttttagttgtggggaaaaaacaaagatggcttgcaattggggtaacta |
23031423 |
T |
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| Q |
416 |
ttattgggactaccataatggctactacattgggtactatgagttattgggttattaggcatagaattgaagcttcaagtatacgaaaatcttcaatggg |
515 |
Q |
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| T |
23031422 |
ttattgggactaccataatggctactacattgggtactatgagttattgggttattaggcatagaattgaagcttcaagtatacgaaaatcttcaatggg |
23031323 |
T |
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| Q |
516 |
aagtaggtcaaggtctttttcagtttcagttgttatgtctgattctgagatattaaacaatgagcgt |
582 |
Q |
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| T |
23031322 |
aagtaggtcaaggtctttttcagtttcagttgttatgtctgattctgagatattaaacaatgagcgt |
23031256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 22 - 485
Target Start/End: Complemental strand, 41065382 - 41064919
Alignment:
| Q |
22 |
acagaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcatagcaacggttgccttcgcagccatcttcactgtcccaggccaattcg |
121 |
Q |
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| T |
41065382 |
acagaaggactcaacaatgcaataaactcaacaaccgttgtggcagtactaatagcaacggttgcatttgctgcgattttcactgtccctggtcaatttg |
41065283 |
T |
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| Q |
122 |
tggatgatccnnnnnnngttcgt-aacggaaaatcccttggcgaagcaaacatagcttcagaacctgcgtttctagtattcatcgtgtttgattcggttg |
220 |
Q |
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| T |
41065282 |
ttgatgatccaaacaatattccagaagggatgatac-ttggtgaagcaaatatatctccagaagcaccgtttataattttctttgtatttgattctattg |
41065184 |
T |
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| Q |
221 |
cgcttttcatctccctcgcggttgtggtggttcaaacatcaatagttgttgttgaaagcaaagcaaagaaacaaatgatggctattattaacaaactaat |
320 |
Q |
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| T |
41065183 |
cactcttcatttctctggctgttgtggttgttcaaacttcggttgttgttatcgaaagcaaagcaaagaaacaaatggcggctataattaataagctaat |
41065084 |
T |
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| Q |
321 |
gtgggtagcttgtgtgcttatatctgtgtcatttttggctttgtcatttttagttgtgggtaaaaaacaaagatggcttgcaattggggtaactattatt |
420 |
Q |
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| T |
41065083 |
gtggttggcttgtgtgcttatttctgtggcatttttagcattgtcatttgttgttgttggaaaggaagaaaaatggttggcaatttttgttaccattata |
41064984 |
T |
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| Q |
421 |
gggactaccataatggctactacattgggtactatgagttattgggttattaggcatagaattga |
485 |
Q |
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|| | || ||||||||||| || ||||| |||||| |||||||||| |||| |||| ||||||| |
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| T |
41064983 |
ggagcaactataatggctacaactttgggaactatgtgttattgggtcattaagcatcgaattga |
41064919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 40420615 - 40420534
Alignment:
| Q |
272 |
ttgaaagcaaagcaaagaaacaaatgatggctattattaacaaactaatgtgggtagcttgtgtgcttatatctgtgtcatt |
353 |
Q |
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||||||| |||||||||||||||||| |||| |||| ||||| |||||||| |||| |||||| | || |||||| |||| |
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| T |
40420615 |
ttgaaagggaagcaaagaaacaaatgacggctgttataaacaagttaatgtggatagcatgtgtgttaatttctgtggcatt |
40420534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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