View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683_low_4 (Length: 434)
Name: NF5683_low_4
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Complemental strand, 49657208 - 49656799
Alignment:
| Q |
8 |
ccaagaatataatcagtttaaaacaatatcgaccgttaatctgagattgtaaattgcgtgacactgacacacacttgctgcacaaaaccaaatccatcta |
107 |
Q |
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| T |
49657208 |
ccaataatataatcagtttaaaacaatatcgaccgttaatctgagattgaaaattgcgtgacactgacacacacttgctgcacaaaatcaaatccatcta |
49657109 |
T |
|
| Q |
108 |
agactgaccaaggtaatttgtatgtaagtaacttttcaatggatgccctttggaaagtatcatttgataggataaatttgtagtattgaaagtgtatata |
207 |
Q |
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| T |
49657108 |
agactgaccaaggtaatttgtatgtaagtaacttttcaatggatgccctttggaaagtatcatttgataggataaatttgtagtattgaaagtgtatata |
49657009 |
T |
|
| Q |
208 |
taccattttacaagaaccattgggttctttatatgtaaaatatatattcatatttgtgtgagtcattttttaatttcatagtgaccttatgacattggtt |
307 |
Q |
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| T |
49657008 |
taccattttacaagaagcattgggttctttatatgtaaaatatatattcatatttgtgtgagtcattttttaatttcatagtgaccttatgacattggtt |
49656909 |
T |
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| Q |
308 |
caataaaacacaccaacaaaaaatggacaaacaactgcaactaacataattttgagcaaatgcttctattttgtttctcactttnnnnnnngattcttca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49656908 |
caataaaacacaccaacaaaaaatggacaaacaactgcaactaacataattttgagcaaatgcttctattttgtttctcactttaaaaaaagattcttca |
49656809 |
T |
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| Q |
408 |
atatcatttc |
417 |
Q |
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| T |
49656808 |
atatcatttc |
49656799 |
T |
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Back To:
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Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 8550959 - 8551077
Alignment:
| Q |
90 |
caaaaccaaatccatctaagactgaccaaggtaatttgtatgtaagtaacttttcaatggatgccctttggaaagtatcatttgataggataaatttgta |
189 |
Q |
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|||| ||||||||||||||||||| |||||| | || ||||||||||||||||||||||||||||||||| || |||| ||| ||||||||| ||||| |
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| T |
8550959 |
caaatccaaatccatctaagactgcccaaggaacttggtatgtaagtaacttttcaatggatgccctttgccaaatatcgttttctaggataaacttgta |
8551058 |
T |
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| Q |
190 |
gtattgaaagtgtatatat |
208 |
Q |
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||||||||||||||||||| |
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| T |
8551059 |
gtattgaaagtgtatatat |
8551077 |
T |
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