View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5683_low_5 (Length: 407)

Name: NF5683_low_5
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5683_low_5
NF5683_low_5
[»] chr6 (40 HSPs)
chr6 (16-390)||(31284455-31284829)
chr6 (42-389)||(26623144-26623514)
chr6 (42-389)||(26729122-26729492)
chr6 (310-390)||(27592960-27593040)
chr6 (228-390)||(26861780-26861942)
chr6 (228-390)||(28786445-28786607)
chr6 (228-390)||(28792566-28792728)
chr6 (228-390)||(28781306-28781468)
chr6 (301-381)||(28098300-28098380)
chr6 (321-390)||(27604656-27604725)
chr6 (277-385)||(26884337-26884445)
chr6 (310-390)||(27610942-27611022)
chr6 (310-390)||(27679113-27679193)
chr6 (310-390)||(27718319-27718399)
chr6 (310-390)||(27724785-27724865)
chr6 (229-380)||(28227127-28227278)
chr6 (234-347)||(27214630-27214743)
chr6 (234-347)||(27234485-27234598)
chr6 (135-211)||(26623636-26623712)
chr6 (135-211)||(26729613-26729689)
chr6 (318-390)||(26802609-26802681)
chr6 (318-390)||(27427554-27427626)
chr6 (310-366)||(27677554-27677610)
chr6 (310-366)||(27706342-27706398)
chr6 (228-380)||(28234740-28234892)
chr6 (229-380)||(28181291-28181442)
chr6 (310-367)||(27698434-27698491)
chr6 (306-374)||(26949844-26949912)
chr6 (315-374)||(26848843-26848902)
chr6 (228-290)||(26937373-26937435)
chr6 (228-290)||(28185633-28185695)
chr6 (228-290)||(28297571-28297633)
chr6 (228-290)||(28325744-28325806)
chr6 (228-290)||(28514440-28514502)
chr6 (238-274)||(25580002-25580038)
chr6 (238-274)||(26056209-26056245)
chr6 (238-274)||(26076179-26076215)
chr6 (228-328)||(27337923-27338023)
chr6 (228-328)||(27398663-27398763)
chr6 (228-280)||(28098215-28098267)
[»] chr1 (2 HSPs)
chr1 (185-390)||(28127481-28127686)
chr1 (228-385)||(28164208-28164365)
[»] scaffold0277 (2 HSPs)
scaffold0277 (228-390)||(4529-4691)
scaffold0277 (228-390)||(13490-13652)
[»] scaffold0419 (1 HSPs)
scaffold0419 (228-390)||(7692-7854)
[»] scaffold0349 (2 HSPs)
scaffold0349 (310-390)||(14296-14376)
scaffold0349 (310-366)||(3361-3417)
[»] scaffold0038 (3 HSPs)
scaffold0038 (229-380)||(27625-27776)
scaffold0038 (228-380)||(34902-35054)
scaffold0038 (228-290)||(117059-117121)
[»] scaffold0003 (1 HSPs)
scaffold0003 (318-390)||(59737-59809)
[»] chr4 (2 HSPs)
chr4 (318-390)||(18073929-18074001)
chr4 (228-297)||(5090806-5090875)
[»] chr2 (1 HSPs)
chr2 (228-284)||(3279976-3280032)
[»] scaffold0019 (1 HSPs)
scaffold0019 (228-284)||(58140-58196)


Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 31284829 - 31284455
Alignment:
Q  16 ataagttggtgaacaaatnnnnnnncaatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaataactagtatttgttta 115  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31284829 ataagttggtgaacaaataaaaaaacaatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaataactaatatttgttta 31284730  T
Q  116 aatatataaataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtaggcta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31284729 aatatataaataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagaaggcta 31284630  T
Q  216 cccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284629 cccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctc 31284530  T
Q  316 tcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284529 tcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 31284455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 42 - 389
Target Start/End: Complemental strand, 26623514 - 26623144
Alignment:
Q  42 aatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaa-taactagtatttgtttaaatatataaataaaaaat---gttt 137  Q
    |||||||| |||||||| || | ||| |||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||| |||||||   ||||    
T  26623514 aatcacatttatatcttaacaattatgtcatacaattctaaatgttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgttt 26623415  T
Q  138 cccttttaagcatttatatggaatgattgaggaataaaaattgaagaa----------------ggcaaaacaagattgaagtgaagtaggctacccagg 221  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||                ||||||||||||||||||||||||||||||||||||    
T  26623414 cccttttaagcattaatatggaatgattggggaataagaattgaagaaataaagcatatatgaaggcaaaacaagattgaagtgaagtaggctacccagg 26623315  T
Q  222 agaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctg---tattatgttggaacctctct 318  Q
    |  ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| || ||   ||||||  |||||||||| |    
T  26623314 atgacgatggtctccagacaagttagctgcttgtgcaagagctatcttccatttttgcaacctctccatattatatgtattattattatggaacctcttt 26623215  T
Q  319 tcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaa 389  Q
     |||||||||| | |||||| |||||||| ||  | ||||| || |  |||| ||||||||||||| ||||    
T  26623214 gcatgcttagcaagtgcttcgccataactcccagtttgatgccgtatgtgagtaggatccacgccatagaa 26623144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 42 - 389
Target Start/End: Complemental strand, 26729492 - 26729122
Alignment:
Q  42 aatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaa-taactagtatttgtttaaatatataaataaaaaat---gttt 137  Q
    |||||||| |||||||| || | ||| |||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||| |||||||   ||||    
T  26729492 aatcacatttatatcttaacaattatgtcatacaattctaaatgttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgttt 26729393  T
Q  138 cccttttaagcatttatatggaatgattgaggaataaaaattgaagaa----------------ggcaaaacaagattgaagtgaagtaggctacccagg 221  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||                ||||||||||||||||||||||||||||||||||||    
T  26729392 cccttttaagcattaatatggaatgattggggaataagaattgaagaaataaagcatatatgaaggcaaaacaagattgaagtgaagtaggctacccagg 26729293  T
Q  222 agaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctg---tattatgttggaacctctct 318  Q
    |  ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| || ||   ||||||  |||||||||| |    
T  26729292 atgacgatggtctccagacaagttagctgcttgtgcaagagctatcttccatttttgcaacctctccatattatatgtattattattatggaacctcttt 26729193  T
Q  319 tcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaa 389  Q
     |||||||||| | |||||| |||||||| ||  | ||||| || |  |||| ||||||||||||| ||||    
T  26729192 gcatgcttagcaagtgcttcgccataactcccagtttgatgccgtatgtgagtaggatccacgccatagaa 26729122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 27592960 - 27593040
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||| |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  27592960 aacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcgcacatgagaaggatccacaccaaagaaa 27593040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 390
Target Start/End: Complemental strand, 26861942 - 26861780
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| |||||  | ||||| |  |||||| | |||||||| ||||| | |||  ||| || ||| ||||| | ||||||||||    
T  26861942 atggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattttgaaaccttttttcatgctta 26861843  T
Q  328 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||||||| |||||| ||||||||||||||||||||| || |||||||| |||| |||||    
T  26861842 gccaatgcttcaccataaatacctctatgatgtcgcacattagtaggatccatgccatagaaa 26861780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 390
Target Start/End: Complemental strand, 28786607 - 28786445
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  |||||||| ||||| | |||  ||| || ||| ||||||| |||||||  |    
T  28786607 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgccca 28786508  T
Q  328 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||||||| ||||||| |||| ||||||||||||||| || |||||| || |||||||||    
T  28786507 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatcgacaccaaagaaa 28786445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 390
Target Start/End: Complemental strand, 28792728 - 28792566
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  |||||||| ||||| | |||  ||| || ||| ||||||| |||||||  |    
T  28792728 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgccca 28792629  T
Q  328 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||||||| ||||||| |||| ||||||||||||||| || |||||| || |||||||||    
T  28792628 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatcgacaccaaagaaa 28792566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 390
Target Start/End: Complemental strand, 28781468 - 28781306
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  |||||||| ||||| | |||  ||| || ||| ||||||| ||||||   |    
T  28781468 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgtcca 28781369  T
Q  328 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||||||| ||||||  |||| ||||||||||||||| || ||||||||| |||||||||    
T  28781368 gccaatgcttcaccataaggacctgtatgatgtcgcacattagtaggatccacaccaaagaaa 28781306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 28098300 - 28098380
Alignment:
Q  301 ttatgttggaacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacg 381  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||| ||  | ||||||||||| |||||||| ||||||    
T  28098300 ttattttggaacctctcttcatgcttagctaatgcttcaccataactccccgtctgatgtcgcacgtgagaaggttccacg 28098380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 27604656 - 27604725
Alignment:
Q  321 atgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||| |||||||||||  || ||||||||| |||||||||||||||||||||| ||||| |||||||||    
T  27604656 atgctcagccaatgcttgaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaa 27604725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 385
Target Start/End: Complemental strand, 26884445 - 26884337
Alignment:
Q  277 tgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggat 376  Q
    |||||||| ||||| | |||  ||| || ||| ||||| | |||||| | |||||||||||| |||||||||||| ||||||||||||||| || |||||    
T  26884445 tgcaacctctccatgttatccttatcattttgaaaccttttttcatggtcagccaatgcttcaccataactacctgtatgatgtcgcacatcagtaggat 26884346  T
Q  377 ccacgccaa 385  Q
    |||| ||||    
T  26884345 ccacaccaa 26884337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 27610942 - 27611022
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | ||||||||||| | || ||| |||||||| ||||||    
T  27610942 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcactttagtaggttccacgccgaagaaa 27611022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 27679193 - 27679113
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||| |||||||| |||||||||||| |||||||||||| || |||||||||||  || ||| ||||| |||||||||    
T  27679193 aacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaacagtaggttccacaccaaagaaa 27679113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 27718319 - 27718399
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | ||||||||||| | || ||| |||||||| ||||||    
T  27718319 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaa 27718399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 27724785 - 27724865
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | ||||||||||| | || ||| |||||||| ||||||    
T  27724785 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaa 27724865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 380
Target Start/End: Complemental strand, 28227278 - 28227127
Alignment:
Q  229 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttag 328  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||   ||   | |||| |||||||||||||  ||| | |     
T  28227278 tggtggccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcat 28227179  T
Q  329 ccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccac 380  Q
    ||| |||||  |||||||| ||  | |||||||||||||||||||| |||||    
T  28227178 ccagtgctttaccataactgcccttgtgatgtcgcacatgagaaggttccac 28227127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 347
Target Start/End: Complemental strand, 27214743 - 27214630
Alignment:
Q  234 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagccaat 333  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| |||||||||||||||||||| |      
T  27214743 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagcaagc 27214644  T
Q  334 gcttctccataact 347  Q
    ||||| ||||||||    
T  27214643 gcttcaccataact 27214630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 347
Target Start/End: Original strand, 27234485 - 27234598
Alignment:
Q  234 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagccaat 333  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| |||||||||||||||||||| |      
T  27234485 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagcaagc 27234584  T
Q  334 gcttctccataact 347  Q
    ||||| ||||||||    
T  27234585 gcttcaccataact 27234598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 26623712 - 26623636
Alignment:
Q  135 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 211  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26623712 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26623636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 26729689 - 26729613
Alignment:
Q  135 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 211  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26729689 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26729613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 26802681 - 26802609
Alignment:
Q  318 ttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    |||||||| |||||||||||| ||||| |||| | ||||||| ||||||| || ||||||||| |||||||||    
T  26802681 ttcatgctcagccaatgcttcaccatagctacatgtatgatggcgcacattagtaggatccacaccaaagaaa 26802609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 27427554 - 27427626
Alignment:
Q  318 ttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    |||||||| |||||||||||  ||||| |||||| ||||||||||||||| || ||| ||||| |||||||||    
T  27427554 ttcatgctcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaa 27427626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 27677554 - 27677610
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcaca 366  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | ||||||||||||    
T  27677554 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcaca 27677610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 27706342 - 27706398
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcaca 366  Q
    ||||||| |||||||| |||||||||||| |||||||||||| || |||||||||||    
T  27706342 aacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcaca 27706398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 28234892 - 28234740
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| ||||| | |||  | |||| ||||||| ||| |  ||| | |    
T  28234892 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttctttatatgatca 28234793  T
Q  328 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccac 380  Q
     ||| |||||  |||||||| ||  | ||||||||||| |||||||| |||||    
T  28234792 tccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccac 28234740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 380
Target Start/End: Complemental strand, 28181442 - 28181291
Alignment:
Q  229 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttag 328  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||   ||   | |||| |||||||||||||  ||| | |     
T  28181442 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcat 28181343  T
Q  329 ccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccac 380  Q
    ||| |||||  |||||||| ||  | ||||||||||| |||||||| |||||    
T  28181342 ccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccac 28181291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 27698434 - 27698491
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacat 367  Q
    ||||||| |||||||| |||||||||||  |||||||||||| ||||||||| |||||    
T  27698434 aacctcttttcatgctcagccaatgctttgccataactacctttatgatgtctcacat 27698491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 26949912 - 26949844
Alignment:
Q  306 ttggaacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaagg 374  Q
    |||||||||||||||||||||||| | |||||| |||||||||    | ||||||||||| ||||||||    
T  26949912 ttggaacctctcttcatgcttagcaagtgcttcaccataactataattctgatgtcgcacgtgagaagg 26949844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 374
Target Start/End: Complemental strand, 26848902 - 26848843
Alignment:
Q  315 ctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaagg 374  Q
    ||||||||||||||| | |||||| ||||||||||   | ||||||||||||||||||||    
T  26848902 ctcttcatgcttagcaagtgcttcaccataactactattctgatgtcgcacatgagaagg 26848843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 26937435 - 26937373
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 290  Q
    ||||| |||||||||||| || |||||  |||||||||||||||||||  ||||||| |||||    
T  26937435 atggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccat 26937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 28185695 - 28185633
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 290  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28185695 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28185633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 28297571 - 28297633
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 290  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28297571 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28297633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 28325806 - 28325744
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 290  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28325806 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 28325744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 28514502 - 28514440
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 290  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28514502 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28514440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 25580038 - 25580002
Alignment:
Q  238 gacaagttagctgcttgagtaagagctatcttccatt 274  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  25580038 gacaagttagcagcttgggtaagagctatcttccatt 25580002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 26056245 - 26056209
Alignment:
Q  238 gacaagttagctgcttgagtaagagctatcttccatt 274  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26056245 gacaagttagcagcttgagtaagagccatcttccatt 26056209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 26076215 - 26076179
Alignment:
Q  238 gacaagttagctgcttgagtaagagctatcttccatt 274  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26076215 gacaagttagcagcttgagtaagagccatcttccatt 26076179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 328
Target Start/End: Original strand, 27337923 - 27338023
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27337923 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27338022  T
Q  328 g 328  Q
    |    
T  27338023 g 27338023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 328
Target Start/End: Original strand, 27398663 - 27398763
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27398663 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27398762  T
Q  328 g 328  Q
    |    
T  27398763 g 27398763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 28098215 - 28098267
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgca 280  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||    
T  28098215 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgca 28098267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 185 - 390
Target Start/End: Original strand, 28127481 - 28127686
Alignment:
Q  185 aggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 284  Q
    ||||||||||||||| ||||  |||||| ||||| |||  |  ||||| ||| ||||||||||| ||||| || ||||||||||||||||  ||||| |     
T  28127481 aggcaaaacaagatttaagtatagtagggtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcg 28127580  T
Q  285 ttccatatgatctgtattatgttggaacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgcca 384  Q
     ||||| |  |   | |||| ||||||||||||| |||||||||| |   |||| |||||||| ||| |||||| |||||||| || |||||||||||||    
T  28127581 ctccatgtttttcttgttattttggaacctctctccatgcttagcaagctcttcaccataactccctgtatgatatcgcacatcagtaggatccacgcca 28127680  T
Q  385 aagaaa 390  Q
    ||||||    
T  28127681 aagaaa 28127686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 385
Target Start/End: Original strand, 28164208 - 28164365
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||||||||||||||  ||||| |  ||||| |  |   | |||| ||||||||||||  ||||||||    
T  28164208 atggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctctcaccatgctta 28164307  T
Q  328 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaa 385  Q
    |  |   |||  |||||||| ||| ||||||||||||||| || ||||||||||||||    
T  28164308 gtaagatctttgccataactccctgtatgatgtcgcacatcagtaggatccacgccaa 28164365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 390
Target Start/End: Original strand, 4529 - 4691
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  |||||||| ||||| | ||   ||| || ||| ||||||| |||||||| |    
T  4529 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 4628  T
Q  328 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||||||| |||||||||||| |  |||||||||| | || ||| |||||||| ||||||    
T  4629 gccaatgcttcaccataactacctttcagatgtcgcacgttagtaggttccacgccgaagaaa 4691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 390
Target Start/End: Original strand, 13490 - 13652
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  ||||| |  ||||| | ||   ||| || ||| ||||||| ||||||   |    
T  13490 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 13589  T
Q  328 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||||||| ||||||| |||| ||||||||||||||| || ||||||||| |||||||||    
T  13590 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatccacaccaaagaaa 13652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 390
Target Start/End: Complemental strand, 7854 - 7692
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  ||||| |  ||||| | ||   ||| || ||| ||||||| ||||||   |    
T  7854 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 7755  T
Q  328 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||||||| ||||||| |||| ||||||||||||||| || ||||||||| |||||||||    
T  7754 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatccacaccaaagaaa 7692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 14296 - 14376
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | ||||||||||| | || ||| |||||||| ||||||    
T  14296 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaa 14376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 3361 - 3417
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcaca 366  Q
    ||||||| |||||||| |||||||||||| |||||||||||| || |||||||||||    
T  3361 aacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcaca 3417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 380
Target Start/End: Complemental strand, 27776 - 27625
Alignment:
Q  229 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttag 328  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||   ||   | |||| |||||||||||||  ||| | |     
T  27776 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcat 27677  T
Q  329 ccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccac 380  Q
    ||| |||||  |||||||| ||  | |||||||||||||||||||| |||||    
T  27676 ccagtgctttaccataactgcccttgtgatgtcgcacatgagaaggttccac 27625  T

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Target: scaffold0038; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 35054 - 34902
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| ||||| | |||  | |||| ||||||| ||| |  ||| | |    
T  35054 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttctttatatgatca 34955  T
Q  328 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccac 380  Q
     ||| |||||  |||||||| ||  | ||||||||||| |||||||| |||||    
T  34954 tccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccac 34902  T

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Target: scaffold0038; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 117121 - 117059
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 290  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  117121 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 117059  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 59809 - 59737
Alignment:
Q  318 ttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    |||||||| |||||||||||  ||||| |||||| ||||||||||||||| || ||| ||||| |||||||||    
T  59809 ttcatgctcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaa 59737  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 18074001 - 18073929
Alignment:
Q  318 ttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaa 390  Q
    |||||||| |||||||||||  ||||| |||||| ||||||||||||||| || ||| ||||| |||||||||    
T  18074001 ttcatgctcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaa 18073929  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 5090806 - 5090875
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatct 297  Q
    ||||| ||||||||| |||||||||||  ||||||| |||| |||||| |||||| | ||||||| ||||    
T  5090806 atggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccatattatct 5090875  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 3280032 - 3279976
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 284  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  3280032 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 3279976  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 58140 - 58196
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 284  Q
    ||||| |||||| |||||||| |  |||||||||||| |||||||||| ||||||||    
T  58140 atggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacct 58196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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