View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5683_low_7 (Length: 350)
Name: NF5683_low_7
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5683_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 49192040 - 49191843
Alignment:
| Q |
1 |
gctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgctaaagccgtcgccctaagggatgctgagttacaaggtgaagttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49192040 |
gctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgccaaagccgtcgctctaagggatgctgagttacaaggtgaagttg |
49191941 |
T |
|
| Q |
101 |
agaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagtttagtacatgca |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49191940 |
agaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagtttagtacatgca |
49191843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 49203146 - 49202958
Alignment:
| Q |
1 |
gctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgctaaagccgtcgccctaagggatgctgagttacaaggtgaagttg |
100 |
Q |
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||||||||||| || |||||||||||||||||||| ||||| ||||||||||| || ||||| || ||||||||||||||||||||||||||||||| |
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| T |
49203146 |
gctaagaagaaggcagcttggactaaggcggctcaggtggctgaagttgaggcgaagaaggccgtggctctaagggatgctgagttacaaggtgaagttg |
49203047 |
T |
|
| Q |
101 |
agaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagttta |
189 |
Q |
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| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49203046 |
aaaggatgaatgctttgactactactgagaagcttaaagccgagttccttagcaaagctagtgttcaatatgaaactaaggttagttta |
49202958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 49208317 - 49208132
Alignment:
| Q |
1 |
gctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgctaaagccgtcgccctaagggatgctgagttacaaggtgaagttg |
100 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||||||| || ||||||||||||||||||| || |||||||| |||||||| |||||||| |||| |
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| T |
49208317 |
gctaagaagaaagctgcttggacaatggcggctcaagtggctgagcttgaggctgctaaagccgtggctctaagggaagctgagttgcaaggtgaggttg |
49208218 |
T |
|
| Q |
101 |
agaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagt |
186 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||||| |
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| T |
49208217 |
agaggatgaatgctttgactactactgagaagcttaaagctgatttccttagcaaagctagtgttgaatatgacactaaggttagt |
49208132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 49188304 - 49188114
Alignment:
| Q |
1 |
gctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgctaaagccgtcgccctaagggatgctgagttacaaggtgaagttg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| || || || || |||||||| |||||||| ||||||||||| | |
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| T |
49188304 |
gctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttgcaaggtgaagtcg |
49188205 |
T |
|
| Q |
101 |
agaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagtttagt |
191 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49188204 |
agaggatgaatgcattgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagtttagt |
49188114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 49213151 - 49212972
Alignment:
| Q |
7 |
aagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgctaaagccgtcgccctaagggatgctgagttacaaggtgaagttgagagga |
106 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||||| ||||||||||| || || || || |||||||| |||||||| |||||||| ||||||| || |
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| T |
49213151 |
aagaaggctgcttggaccaaggcggctcaggtggctgaagttgaggcgaagaaggctgtggctctaagggaagctgagttgcaaggtgaggttgagaaga |
49213052 |
T |
|
| Q |
107 |
tgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |
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| T |
49213051 |
tgaatgctttgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaactaaggttagt |
49212972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 49191761 - 49191710
Alignment:
| Q |
280 |
gtacaaacaatgaatttttgaatacaattcatttttactagctagcaacaag |
331 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49191761 |
gtacaaaaaatgaatttttgaatacaattcatttttactagctagcaacaag |
49191710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 32592512 - 32592694
Alignment:
| Q |
4 |
aagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgctaaagccgtcgccctaagggatgctgagttacaaggtgaagttgaga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| || || |||||||| |||||||| || ||||| ||||||| |
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| T |
32592512 |
aagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaagctgctaaagctgtggctctaagggaagctgagttgcagggtgaggttgaga |
32592611 |
T |
|
| Q |
104 |
ggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagt |
186 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| |
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| T |
32592612 |
ggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttcagtatgaaaccaaggttagt |
32592694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 37030815 - 37030618
Alignment:
| Q |
1 |
gctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgctaaagccgtcgccctaagggatgctgagttacaaggtgaagttg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| || || || |||||||| |||||||||||||||||||||| |
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|
| T |
37030815 |
gctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagttacaaggtgaagttg |
37030716 |
T |
|
| Q |
101 |
agaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagtttagtacatgca |
198 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
37030715 |
agaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagtttagtccatgca |
37030618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 31527409 - 31527272
Alignment:
| Q |
49 |
gaggctgctaaagccgtcgccctaagggatgctgagttacaaggtgaagttgagaggatgaatgctttgactacaactgagaagcttaaagctgagttcc |
148 |
Q |
| |
|
|||||||||||||| || || |||||||| |||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || | |
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|
| T |
31527409 |
gaggctgctaaagctgtggctctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttac |
31527310 |
T |
|
| Q |
149 |
ttagcaaagctagtgttcaatatgaaaccaaggttagt |
186 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| |
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|
| T |
31527309 |
ttagcaaagctagtgttgagtatgaaaccaaggttagt |
31527272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 51824829 - 51824717
Alignment:
| Q |
6 |
gaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgctaaagccgtcgccctaagggatgctgagttacaaggtgaagttgagagg |
105 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || | |||||||| |||||||| |||||||| ||||||| | |
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| T |
51824829 |
gaagaaagcggcttggactaaggctgctcaagtggctcaagttgaggctgctaaatctgtggttctaagggaagctgagttgcaaggtgaggttgagaag |
51824730 |
T |
|
| Q |
106 |
atgaatgctttga |
118 |
Q |
| |
|
||||||||||||| |
|
|
| T |
51824729 |
atgaatgctttga |
51824717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 51824352 - 51824278
Alignment:
| Q |
124 |
actgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagtttagtacatgca |
198 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51824352 |
actgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagtttagtccatgca |
51824278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 26756682 - 26756496
Alignment:
| Q |
2 |
ctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgctaaagccgtcgccctaagggatgctgagttacaaggtgaagttga |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||| |
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|
| T |
26756682 |
ctaagaagaaagcggcttggactaaggcggctcaagtcgctgaagttgaggctgctaaagctgtggcccttagggaagctgagttgcaaggtgaggttga |
26756583 |
T |
|
| Q |
102 |
gaggatgaatgctttgactacaactgagaagcttaaagctgagttcc---ttagcaaagctagtgttcaatatgaaaccaaggttagt |
186 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||| | ||||||||||||||||||| |
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|
| T |
26756582 |
gaggatgaatgctttgactaccactgagaagcttaaacctgagttcctaattagtaaagctagtgtac-atatgaaaccaaggttagt |
26756496 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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