View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5683_low_8 (Length: 333)

Name: NF5683_low_8
Description: NF5683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5683_low_8
NF5683_low_8
[»] chr2 (12 HSPs)
chr2 (1-323)||(10444147-10444468)
chr2 (20-311)||(10511981-10512286)
chr2 (20-311)||(10467025-10467325)
chr2 (1-323)||(10456931-10457263)
chr2 (24-323)||(10500631-10500939)
chr2 (1-311)||(10482187-10482513)
chr2 (189-323)||(10538406-10538537)
chr2 (186-314)||(10894989-10895116)
chr2 (258-312)||(27963579-27963633)
chr2 (258-314)||(28108208-28108264)
chr2 (229-314)||(9084336-9084422)
chr2 (219-314)||(10854630-10854725)
[»] chr1 (1 HSPs)
chr1 (9-314)||(24051136-24051460)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 10444147 - 10444468
Alignment:
Q  1 tcatctgccagaatctcataatgacatatctagattttgtacaactaaataaaacattcctagactcccaattagttgcatatacaccagctcagcatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10444147 tcatctgccagaatctcataatgacatatctagattttgtacaactaaataaaacattcctagactcccaattagttgcatatacaccagctcagcatat 10444246  T
Q  101 acataaaagccgtccatcaaggaggcctatcaaaagagcaacattgttgtcgagtatgctaaactgttgaaacctaaaaagaaatacacaaaacaagaga 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10444247 acataaaagccgtccatcaaggaggcctatcaaaagagca-cattgttgtcgagtatgctaaactgttgaaacctaaaaagaaatacacaaaacaagaga 10444345  T
Q  201 acttggttatgtaaactgccattaaagccaaggtagggaagttaatttgtcatataaagaaactacttacttgcacttaagaatctctaaagacctactc 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10444346 acttggttatgtaaactgccattaaagccaaggcagggaagttaatttgtcatataaagaaactacttacttgcacttaagaatctccaaagacctactc 10444445  T
Q  301 agaaacatcaataggtgcctttg 323  Q
    |||||||||||||||||||||||    
T  10444446 agaaacatcaataggtgcctttg 10444468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 10511981 - 10512286
Alignment:
Q  20 aatgacatatctagattt-tgtacaact--aaataaaacattcctagactcccaattagttgcatatacaccagctcagcatatacataaa------agc 110  Q
    |||||||||||||||| | |||||||||  ||||||||||||  || |||||||| |||| ||| |||||||| |||| |||||||||||       ||     
T  10511981 aatgacatatctagatatatgtacaactcaaaataaaacatttgtaaactcccaaatagtggcaaatacaccacctcaacatatacataatcaaaagagt 10512080  T
Q  111 cgtccatcaaggaggcctatcaaaagagcaacattgttg-----tcgagtatgctaaactgttgaaacctaaaaagaaatacacaaaacaagagaacttg 205  Q
     ||||| |||||||||||||||||||||  |||||  ||     |||||| ||||||||| | ||||||||||||| |||||||| ||||||| || | |    
T  10512081 tgtccaccaaggaggcctatcaaaagagtgacattactgaaacttcgagtctgctaaactttcgaaacctaaaaagcaatacacagaacaagacaattag 10512180  T
Q  206 gttatgtaaactgccattaaagccaaggtagggaagttaatttgtcatataaagaaactacttacttgcacttaagaatctctaaagacctactcagaaa 305  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  |||| ||||  | ||| |||||||||    
T  10512181 gttatataaattgccattaaagccaaggtagggaagttaatttgtcatatttagaaactacttacttgcactccagaaactcttgaaaccaactcagaaa 10512280  T
Q  306 catcaa 311  Q
    ||||||    
T  10512281 catcaa 10512286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 10467025 - 10467325
Alignment:
Q  20 aatgacatatctagattttgtacaact--aaataaaacattcctagactcccaattagttgcatatacaccagctcagcatatacat----aaaagccgt 113  Q
    |||| ||||||||||||||||||||||  ||||| ||||||||||||||||||| ||  |||| |||||||| |||| |||||||||    ||||||| |    
T  10467025 aatggcatatctagattttgtacaactcaaaatataacattcctagactcccaaatatctgcagatacaccaactcaacatatacataaacaaaagccat 10467124  T
Q  114 ccatcaaggaggcctatcaaaagagcaacattgttg-------tcgagtatgctaaactgttgaaacctaaaaagaaatacacaaaacaagagaacttgg 206  Q
    |||||||||||||||||||||||||||     | ||       || ||| |||||||||  ||||||||  |||| ||| |||||||||||| |  | ||    
T  10467125 ccatcaaggaggcctatcaaaagagcagtgacgctgccaaaactcaagtctgctaaacttctgaaacct--aaagcaatgcacaaaacaagacagttagg 10467222  T
Q  207 ttatgtaaactgccattaaagccaaggtagggaagttaatttgtcatataaagaaactacttacttgcacttaagaatctctaaagacctactcagaaac 306  Q
      |  |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  |||||||||  ||| |  |||||||||    
T  10467223 --agataaattgccattaaagccaaggtagggaagttaatttgtcatataaagaaaatactaacttgcactccagaatctcttgagatcagctcagaaac 10467320  T
Q  307 atcaa 311  Q
    |||||    
T  10467321 atcaa 10467325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 10456931 - 10457263
Alignment:
Q  1 tcatctgccagaatctcataatgacatatctagat-tttgtacaact--aaataaaacattcctagactcccaattagttgcatatacaccagctcagca 97  Q
    ||||| ||||||||| || |||| ||||||||||| ||||||||| |  ||||||||||||| ||||||||||| ||| |||| |||||||| |||| ||    
T  10456931 tcatcagccagaatcacaaaatggcatatctagatatttgtacaagtcaaaataaaacattcttagactcccaaatagatgcacatacaccaactcaaca 10457030  T
Q  98 tatacat------aaaagccgtccatcaaggaggcctatcaaaagagcaacattgttg-----tcgagtatgctaaactgttgaaacctaaaaagaaata 186  Q
    |||||||      || || ||| ||||||||||| ||||||||||||  ||| || ||     |||||| ||||||| | ||||||||||||||| | ||    
T  10457031 tatacattaacaaaatagtcgttcatcaaggaggtctatcaaaagagtgacactgctgaaacttcgagtctgctaaaattttgaaacctaaaaagcacta 10457130  T
Q  187 cacaaaacaagagaacttggttatgtaaactgccattaaagccaaggtagggaagttaatttgtc--atataaagaaactacttacttgcacttaagaat 284  Q
    |||||||||||| || | ||| || ||||||||| ||||||||    ||   |||||||||||||  ||||| ||||||||||||||||||||  |||||    
T  10457131 cacaaaacaagacaattaggtgatataaactgcccttaaagcc----tataaaagttaatttgtcatatatagagaaactacttacttgcactccagaat 10457226  T
Q  285 ctctaaagacctactcagaaacatcaataggtgcctttg 323  Q
    |||   ||||| ||| ||||||||||||||  |||||||    
T  10457227 ctc--gagaccaactaagaaacatcaatagaagcctttg 10457263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 323
Target Start/End: Original strand, 10500631 - 10500939
Alignment:
Q  24 acatatctagat-tttgtacaactaaataaaacattcctagactcccaattagttgcatatacaccagctcagcatatacataaa------agccgtcca 116  Q
    ||||||| |||| |||||| |||| |||||| ||||| || |||||||| |||||||| |||||||| |||| |||||| |||||      |||| ||||    
T  10500631 acatatccagatatttgtaaaactcaataaa-cattcataaactcccaaatagttgcagatacaccaactcaacatataaataaacaaaagagccatcca 10500729  T
Q  117 tcaaggaggcctatcaaaagagcaacattgttg-----tcgagtatgctaaactgttgaaacctaaaaagaaatacacaaaacaagagaacttggttatg 211  Q
     |||| ||||||| ||||||||  ||||||||      ||  || ||||||||| || |||||||||||| ||||||||||||| || || | ||| ||     
T  10500730 ccaagaaggcctaccaaaagagtgacattgttaaaacctcatgtctgctaaacttttcaaacctaaaaagcaatacacaaaacacgacaattaggtgata 10500829  T
Q  212 taaactgccattaaagccaaggtagggaagttaatttgtcatataaagaaactacttacttgcacttaagaatctctaaagacctactcagaaacatcaa 311  Q
    |||| |||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||  |||| ||| | | ||| ||||||| ||||||     
T  10500830 taaattgccattaaagccaagctagggaagttaa--tgtcatataaagaaactacttacttgcactccagaaactccagaaaccaactcagatacatcag 10500927  T
Q  312 taggtgcctttg 323  Q
    |||  |||||||    
T  10500928 tagaagcctttg 10500939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 10482187 - 10482513
Alignment:
Q  1 tcatctgccagaatctcataatgacatatctagattttgtacaact--aaataaaacattcctagactcccaattagttgcatatacaccagctcagcat 98  Q
    ||||| || ||||||||| || ||||||||||||||||| ||||||  |||||| |||||| ||||||||||| |||||| | |||||||| |||| |||    
T  10482187 tcatcagcaagaatctca-aaggacatatctagattttggacaactgaaaataagacattcatagactcccaaatagttgtagatacaccaactcaacat 10482285  T
Q  99 atacataaa------agccgtccatcaaggaggcctatcaaaagagca---acattgttg-----tcgagtatgctaaactgttgaaacctaaaaagaaa 184  Q
    ||||||| |      |||| ||||||||||||||||| | ||||||||   ||| || ||     |||||| | ||||||| |||||||||||| |  ||    
T  10482286 atacatagacaaaagagccatccatcaaggaggcctaccgaaagagcagcgacactgctgaaacttcgagtctactaaacttttgaaacctaaatatcaa 10482385  T
Q  185 tacacaaaacaagagaacttggttatgtaaactgccattaaagccaaggtagggaagttaatttgtcatataaaga--aactacttacttgcacttaaga 282  Q
    |||||| ||||||| |  |  || || |||||||||||||| ||||||| || ||||||||||||||||||| |||  ||||||| |||||||||  |||    
T  10482386 tacacagaacaagacagttaagtgatataaactgccattaa-gccaaggcagagaagttaatttgtcatatatagagaaactactcacttgcactccaga 10482484  T
Q  283 atctctaaagacctactcagaaacatcaa 311  Q
    | ||||  ||||| |||||||||||||||    
T  10482485 aactcttgagaccaactcagaaacatcaa 10482513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 323
Target Start/End: Original strand, 10538406 - 10538537
Alignment:
Q  189 caaaacaagagaacttggttatgtaaactgccattaaagccaaggtagggaagttaatttgtcatataaagaaactacttacttgcacttaagaatctct 288  Q
    |||||||||| || | ||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||| ||| |    
T  10538406 caaaacaagacaattaggtgatataaattgccattaaagccaaggtagggaagttaatctgtcatataaagaaactacttacttgcac---agagtctgt 10538502  T
Q  289 aaagacctactcagaaacatcaataggtgcctttg 323  Q
      ||||| ||||||||||||||||||  |||||||    
T  10538503 tgagaccaactcagaaacatcaatagaagcctttg 10538537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 10895116 - 10894989
Alignment:
Q  186 acacaaaacaagagaacttggttatgtaaactgccattaaagccaaggtagggaagttaatttgtcatataaagaaactacttacttgcacttaagaatc 285  Q
    |||||||||||||||| |  || || |||  | ||||||| |||||||| |  |||||||||| |||| |||| | ||||||||||||||||   |||||    
T  10895116 acacaaaacaagagaaatacgtgatataagtttccattaatgccaaggtggataagttaatttatcatttaaa-acactacttacttgcactctcgaatc 10895018  T
Q  286 tctaaagacctactcagaaacatcaatag 314  Q
    |||  ||||| ||||||||||||||||||    
T  10895017 tcttgagaccgactcagaaacatcaatag 10894989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 27963579 - 27963633
Alignment:
Q  258 agaaactacttacttgcacttaagaatctctaaagacctactcagaaacatcaat 312  Q
    ||||||||||||||||||| | |||||||||  ||||| ||||||||||||||||    
T  27963579 agaaactacttacttgcacgtcagaatctcttgagaccgactcagaaacatcaat 27963633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 28108264 - 28108208
Alignment:
Q  258 agaaactacttacttgcacttaagaatctctaaagacctactcagaaacatcaatag 314  Q
    ||||||||||||||||||| | |||||||||  ||||| ||| ||||||||||||||    
T  28108264 agaaactacttacttgcacatcagaatctcttgagaccaacttagaaacatcaatag 28108208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 9084422 - 9084336
Alignment:
Q  229 caaggtagggaagttaatttgtcatataaa-gaaactacttacttgcacttaagaatctctaaagacctactcagaaacatcaatag 314  Q
    ||||||||| || |||| ||| |||||||| |||||||||||||||||||  ||||||| |  ||| | |||||||||||| |||||    
T  9084422 caaggtaggaaaattaaattgacatataaaagaaactacttacttgcactccagaatcttttgagaacgactcagaaacattaatag 9084336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 314
Target Start/End: Original strand, 10854630 - 10854725
Alignment:
Q  219 ccattaaagccaagg-tagggaagttaatttgtcatataaa-gaaactacttacttgcacttaagaatctctaaagacctactcagaaacatcaatag 314  Q
    ||||||||| ||||| |||||||||||||| |||||| ||| |||||| |||||||||| |  ||||||| ||| | ||||| |||||||||||||||    
T  10854630 ccattaaaggcaagggtagggaagttaatt-gtcataaaaaagaaactgcttacttgcattccagaatctttaagg-cctacacagaaacatcaatag 10854725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 24051460 - 24051136
Alignment:
Q  9 cagaatctcataatgacatatct-agattttgtacaact--aaataaaacattcctagactcccaattagttgcatatacaccagctcagcatatacata 105  Q
    |||||||||| |||||||||||| ||||| |||||||||  |||||||||| |||||||||||||| |||||||| |||||| |  ||| ||||||| ||    
T  24051460 cagaatctcaaaatgacatatcttagattatgtacaactccaaataaaacactcctagactcccaagtagttgcagatacacaatttcatcatatactta 24051361  T
Q  106 aaa--------gccgtccatcaaggaggcctatcaaaagagca---acattgttg-----tcgagtatgctaaactgttgaaacctaaaaagaaatacac 189  Q
    |||        |||||| |||||||| ||| |  |||||||||   | | |  ||     || ||| ||||||||| ||||||||||||||| |||| ||    
T  24051360 aaacaaaaattgccgtctatcaaggaagccaacgaaaagagcagtaaaactaatgaagcttcaagtctgctaaacttttgaaacctaaaaagcaatagac 24051261  T
Q  190 aaaacaagagaacttggttatgtaaactgccattaaagccaaggtagggaagttaatttgtcatataaagaaactacttacttgcacttaagaatctcta 289  Q
    ||||||||| || | ||  || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||  |||||||||     
T  24051260 aaaacaagacaattaggcgatataaattgccattaaagccaaggaagggaagttaatttgtcatataaagaaactacctacttgcactccagaatctctt 24051161  T
Q  290 aagacctactcagaaacatcaatag 314  Q
     ||||| ||||||||||||||||||    
T  24051160 gagaccaactcagaaacatcaatag 24051136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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