View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684-Insertion-11 (Length: 210)
Name: NF5684-Insertion-11
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 21104846 - 21105034
Alignment:
| Q |
8 |
ggaatacaatcaagtaaaagtttccaagggaaagttatcactcttggaggagcctttcctttccaaagataacctaatacattcttct--atgtcattcc |
105 |
Q |
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| T |
21104846 |
ggaaaacaatcaagtaaaagtttccaagaaaaagttatcactcttggaggagcctttcctttccaaagataacctaatacattcttctcaatgtcattcc |
21104945 |
T |
|
| Q |
106 |
atccctcttcccacaccatcgatttctccaacaacgcgtaagtcgaagaaatnnnnnnncatatcattaacctccggtctccacatcca |
194 |
Q |
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| T |
21104946 |
atccctcttcccacaccatcaatttctccaacaacgtgcaagttgaagaaatcaaaaaacatatcattaacctccggtctccacttcca |
21105034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 6390709 - 6390795
Alignment:
| Q |
8 |
ggaatacaatcaagtaaaagtttccaagggaaagttatcactcttggaggagcctttcctttccaaagataacctaatacattcttct |
95 |
Q |
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|||||||||| ||||||||||||||| || |||| || |||| ||| ||||| || |||||||||| |||||| || |||||||||| |
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| T |
6390709 |
ggaatacaat-aagtaaaagtttccacggaaaagctaccactattgatggagctttgcctttccaaatataaccgaaaacattcttct |
6390795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 8407325 - 8407201
Alignment:
| Q |
8 |
ggaatacaatcaagtaaaagtttccaagggaaagttatcactcttggaggagcctttcctttccaaagataacctaatacattcttct--atgtcattcc |
105 |
Q |
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||||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| |
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| T |
8407325 |
ggaatacgatcaagtaaaagtttccaagagaaagccaccactcttggaggagcctttcctttccaaagataaccaaacacattcttctcaatgtcattcc |
8407226 |
T |
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| Q |
106 |
atccctcttcccacaccatcgattt |
130 |
Q |
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||| |||||||||||||||| |||| |
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| T |
8407225 |
atctctcttcccacaccatcaattt |
8407201 |
T |
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