View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5684-Insertion-4 (Length: 999)

Name: NF5684-Insertion-4
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5684-Insertion-4
NF5684-Insertion-4
[»] chr5 (30 HSPs)
chr5 (8-993)||(30080151-30081147)
chr5 (360-449)||(19167578-19167668)
chr5 (343-417)||(21319930-21320004)
chr5 (373-471)||(26205775-26205873)
chr5 (318-403)||(19579715-19579800)
chr5 (318-391)||(21542056-21542129)
chr5 (358-416)||(10010555-10010613)
chr5 (354-468)||(13287395-13287509)
chr5 (368-421)||(16207601-16207654)
chr5 (298-335)||(19167543-19167580)
chr5 (318-471)||(21522696-21522849)
chr5 (318-471)||(21533262-21533415)
chr5 (318-403)||(30098340-30098425)
chr5 (360-420)||(7621237-7621297)
chr5 (343-403)||(32444780-32444840)
chr5 (371-410)||(42192283-42192322)
chr5 (318-403)||(7677719-7677804)
chr5 (73-166)||(35507719-35507812)
chr5 (318-418)||(18592072-18592172)
chr5 (292-448)||(20260469-20260624)
chr5 (385-420)||(309155-309190)
chr5 (370-417)||(9031937-9031984)
chr5 (373-420)||(11596470-11596517)
chr5 (377-420)||(28296325-28296368)
chr5 (375-422)||(38749580-38749627)
chr5 (368-411)||(38784812-38784855)
chr5 (371-401)||(10009842-10009872)
chr5 (352-422)||(16315868-16315938)
chr5 (373-403)||(43208289-43208319)
chr5 (368-405)||(15294943-15294980)
[»] chr4 (28 HSPs)
chr4 (292-417)||(37496704-37496829)
chr4 (292-420)||(10634987-10635116)
chr4 (368-411)||(13307883-13307926)
chr4 (343-406)||(22799878-22799941)
chr4 (373-422)||(5654606-5654655)
chr4 (368-417)||(44362666-44362715)
chr4 (343-418)||(7012065-7012140)
chr4 (360-410)||(13117436-13117486)
chr4 (313-450)||(5414127-5414264)
chr4 (373-422)||(10546143-10546192)
chr4 (292-397)||(11797562-11797667)
chr4 (318-403)||(24613661-24613746)
chr4 (376-417)||(28663492-28663533)
chr4 (318-403)||(30982838-30982923)
chr4 (368-408)||(10164864-10164904)
chr4 (373-417)||(18513256-18513300)
chr4 (373-417)||(34589721-34589765)
chr4 (368-410)||(13484030-13484073)
chr4 (325-420)||(30838207-30838302)
chr4 (292-335)||(39619047-39619090)
chr4 (370-417)||(43188612-43188659)
chr4 (371-418)||(51673455-51673502)
chr4 (373-419)||(31243563-31243609)
chr4 (318-403)||(847965-848050)
chr4 (375-412)||(5176989-5177026)
chr4 (318-403)||(5225573-5225658)
chr4 (373-418)||(20743293-20743338)
chr4 (360-453)||(21945467-21945560)
[»] chr7 (23 HSPs)
chr7 (343-471)||(1885519-1885647)
chr7 (292-471)||(48963997-48964176)
chr7 (301-454)||(22801684-22801837)
chr7 (368-416)||(5937431-5937479)
chr7 (318-403)||(24339656-24339741)
chr7 (371-410)||(2144552-2144591)
chr7 (343-417)||(35238169-35238243)
chr7 (368-417)||(44317296-44317345)
chr7 (371-407)||(2143866-2143902)
chr7 (292-398)||(25956464-25956558)
chr7 (373-422)||(38134421-38134470)
chr7 (371-412)||(44172903-44172944)
chr7 (375-419)||(10702561-10702604)
chr7 (360-411)||(13094715-13094766)
chr7 (333-403)||(7438720-7438790)
chr7 (354-420)||(9050129-9050195)
chr7 (353-403)||(27945055-27945105)
chr7 (360-417)||(36013800-36013858)
chr7 (373-410)||(6091334-6091371)
chr7 (372-405)||(18678160-18678193)
chr7 (373-414)||(21247751-21247792)
chr7 (381-410)||(31377007-31377036)
chr7 (318-403)||(32308134-32308219)
[»] chr6 (24 HSPs)
chr6 (292-417)||(785389-785515)
chr6 (354-417)||(19369817-19369880)
chr6 (368-471)||(10031522-10031619)
chr6 (360-411)||(6751884-6751935)
chr6 (318-471)||(9107330-9107483)
chr6 (318-471)||(16766643-16766796)
chr6 (368-432)||(5579639-5579703)
chr6 (360-452)||(1334626-1334718)
chr6 (292-454)||(26402625-26402778)
chr6 (333-411)||(22745963-22746041)
chr6 (375-411)||(29959181-29959217)
chr6 (362-403)||(10157998-10158039)
chr6 (371-420)||(34868170-34868219)
chr6 (344-420)||(10760828-10760903)
chr6 (343-403)||(21395293-21395352)
chr6 (376-419)||(2140499-2140542)
chr6 (371-422)||(4859126-4859177)
chr6 (360-411)||(16516947-16516998)
chr6 (293-352)||(26178537-26178596)
chr6 (371-410)||(31430287-31430326)
chr6 (373-403)||(9024191-9024221)
chr6 (294-422)||(24344535-24344665)
chr6 (332-418)||(26562688-26562774)
chr6 (373-410)||(5635903-5635940)
[»] chr8 (23 HSPs)
chr8 (368-468)||(26915250-26915349)
chr8 (292-418)||(10497750-10497876)
chr8 (300-419)||(2652337-2652455)
chr8 (368-442)||(42874497-42874571)
chr8 (318-403)||(22651990-22652075)
chr8 (318-471)||(29510264-29510417)
chr8 (368-416)||(27733848-27733896)
chr8 (368-407)||(31119097-31119136)
chr8 (360-422)||(24295139-24295201)
chr8 (347-420)||(5307058-5307130)
chr8 (318-403)||(29447070-29447155)
chr8 (375-471)||(44067462-44067558)
chr8 (374-412)||(6960692-6960730)
chr8 (368-418)||(34073988-34074038)
chr8 (375-410)||(1639497-1639532)
chr8 (332-403)||(21465426-21465497)
chr8 (332-399)||(24995954-24996021)
chr8 (360-403)||(31548295-31548338)
chr8 (368-410)||(22600536-22600578)
chr8 (373-403)||(29198494-29198524)
chr8 (375-417)||(34201063-34201105)
chr8 (376-405)||(1591311-1591340)
chr8 (358-403)||(40332205-40332250)
[»] chr2 (24 HSPs)
chr2 (360-471)||(43586007-43586118)
chr2 (368-411)||(13501088-13501131)
chr2 (359-408)||(14450796-14450845)
chr2 (343-407)||(24067263-24067327)
chr2 (360-468)||(33884000-33884108)
chr2 (356-411)||(11439801-11439856)
chr2 (371-418)||(18512155-18512202)
chr2 (338-416)||(18420414-18420492)
chr2 (360-409)||(24067758-24067807)
chr2 (380-416)||(2356380-2356416)
chr2 (292-352)||(14450712-14450772)
chr2 (373-421)||(18570968-18571016)
chr2 (375-419)||(37491872-37491916)
chr2 (355-410)||(14373424-14373479)
chr2 (360-419)||(22131256-22131315)
chr2 (368-418)||(10535769-10535819)
chr2 (372-410)||(26787812-26787850)
chr2 (376-418)||(30563408-30563450)
chr2 (368-410)||(37211895-37211937)
chr2 (375-417)||(40681982-40682024)
chr2 (434-471)||(15907902-15907939)
chr2 (375-420)||(19613630-19613675)
chr2 (318-403)||(37419757-37419842)
chr2 (360-417)||(45000848-45000904)
[»] scaffold0024 (1 HSPs)
scaffold0024 (354-454)||(18104-18198)
[»] chr1 (23 HSPs)
chr1 (337-420)||(24462249-24462332)
chr1 (292-414)||(51896529-51896651)
chr1 (370-472)||(16925558-16925661)
chr1 (371-420)||(14332406-14332454)
chr1 (327-407)||(18946003-18946083)
chr1 (362-420)||(40686762-40686820)
chr1 (318-403)||(9629860-9629945)
chr1 (371-416)||(40176604-40176649)
chr1 (368-420)||(7988461-7988513)
chr1 (318-397)||(6427484-6427563)
chr1 (375-418)||(40747790-40747833)
chr1 (336-403)||(44482244-44482311)
chr1 (373-403)||(3921681-3921711)
chr1 (354-420)||(26462641-26462707)
chr1 (368-410)||(28170389-28170430)
chr1 (360-422)||(31667420-31667482)
chr1 (318-380)||(40917786-40917848)
chr1 (375-417)||(46914056-46914098)
chr1 (345-391)||(48547972-48548018)
chr1 (373-407)||(50233411-50233445)
chr1 (318-403)||(9828058-9828143)
chr1 (374-403)||(11571599-11571628)
chr1 (368-416)||(24176820-24176869)
[»] scaffold0044 (1 HSPs)
scaffold0044 (318-403)||(53194-53279)
[»] chr3 (23 HSPs)
chr3 (360-420)||(49179717-49179777)
chr3 (318-403)||(8039795-8039880)
chr3 (368-468)||(27903582-27903681)
chr3 (292-352)||(34834873-34834933)
chr3 (360-411)||(14338485-14338536)
chr3 (318-403)||(14832113-14832198)
chr3 (375-471)||(24205058-24205154)
chr3 (353-416)||(44427841-44427905)
chr3 (347-418)||(8039205-8039276)
chr3 (343-422)||(15864240-15864319)
chr3 (368-454)||(42076759-42076845)
chr3 (387-471)||(3180793-3180871)
chr3 (318-403)||(4987251-4987336)
chr3 (332-389)||(16789040-16789097)
chr3 (371-431)||(19323461-19323521)
chr3 (375-419)||(24399660-24399704)
chr3 (371-411)||(52558141-52558181)
chr3 (318-397)||(34185083-34185162)
chr3 (360-410)||(6984771-6984821)
chr3 (360-414)||(20691322-20691376)
chr3 (337-403)||(34910331-34910397)
chr3 (371-400)||(34409355-34409384)
chr3 (318-403)||(49651747-49651831)
[»] scaffold0314 (1 HSPs)
scaffold0314 (360-411)||(8954-9005)
[»] scaffold0504 (2 HSPs)
scaffold0504 (343-411)||(8682-8750)
scaffold0504 (292-335)||(8647-8690)
[»] scaffold0007 (1 HSPs)
scaffold0007 (375-471)||(225285-225381)
[»] scaffold0571 (1 HSPs)
scaffold0571 (371-414)||(7693-7736)
[»] scaffold0022 (1 HSPs)
scaffold0022 (375-444)||(99866-99935)


Alignment Details
Target: chr5 (Bit Score: 887; Significance: 0; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 887; E-Value: 0
Query Start/End: Original strand, 8 - 993
Target Start/End: Original strand, 30080151 - 30081147
Alignment:
Q  8 tgtgataatctgaacttgctagtagtagtgatgttaattgtaaacctcttctctgattcaggttcatcaggatatgacagctccattgtcgcattatttt 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30080151 tgtgataatttgaacttgctagtagtagtgatgttaattgtaaacctcttctctgattcaggttcatcaggatatgacagctccattgtcgcattatttt 30080250  T
Q  108 atatatactggccataactcttatctcactggaaatcaactcagcagtgattgtagtgatatccctattataaaggcattgcatagaggtgtgagagtgg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30080251 atatatactggccataactcttatctcactggaaatcaactcagcagtgattgtagtgatatccccattataaaggcattgcatagaggtgtgagagtgg 30080350  T
Q  208 ttgagcttgatatttggcctaattccaccaaagatgatgttcttgtgctacatggaaggtaattatatttttcctgaataatgtttgcacggacacttct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  30080351 ttgagcttgatatttggcctaattccaccaaagatgatgttcttgtgctacatggaaggtaattatatttttcgtggataatgtttgcactgacacttct 30080450  T
Q  308 aattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattt 407  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30080451 aattgaaggagtgtcccggtgtccgacatgtgtcatgtccgacactaacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattt 30080550  T
Q  408 tatcagtgtcgacattttcgtgtcattgtcgtgt-------ctggtgtccgtgttagtgtccgtgcttcatcctgatcaacacagcaaaaaatggtttaa 500  Q
    ||||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30080551 tatcagtgtcgacatttccgtgtcattgtcgtgtctggtgtctggtgtccgtgttagtgtccgtgcttcatcctgatcaacacagcaaaaaatggtttaa 30080650  T
Q  501 tttctatttcccttttcaatgcagctatatgagcataaaaaatcactacttatttggaatgtgtatagtgttgtttcccttttaataaactcttcgtcta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||    
T  30080651 tttctatttcccttttcaatgcagctatatgagcataaaaaatcactacttatttggaatgtgtatagtgttgtctcccttttaataaactcttagttta 30080750  T
Q  601 tgattttgagagtggaagtataagtaactgatagaacaaaaatttcatattctgcaaatctatataagcttgatgaatgagctatcagagtgtaaatcac 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30080751 tgattttgagagtggaagtataagtaactgatagaacaaaaatttcatattctgcaaatctatataagcttgatgaatgagctatcagagtgtaaatcac 30080850  T
Q  701 aagaatttatatctatgcacccaaaggatctcttctgctaaggactgttcatgattcggttcatgaaggaagactgaaccggaatgaacctttacaacag 800  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30080851 aagaatttatatctatgcaccaaaaggatctcttctgctaaggactgttcatgattcggttcatgaaggaagactgaaccggaatgaacctttacaacag 30080950  T
Q  801 tttagtaaaactgaactgaaccatcaatgatataaatcagtttgttaaaccgaactgtttctttgtgaaccttgcaccttttcgaactggacaagctaaa 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30080951 tttagtaaaactgaactgaaccatcaatgatataaatcagtttgttaaaccgaactgtttctttgtgaaccttgcaccttttcgaactggacaagctaaa 30081050  T
Q  901 gtcacacaccgtgcgcattaactgattttggaa-tttaac-agaacc-aaaaccgaactattaaacc-aactgcaccgcaccgagaaaactgaattt 993  Q
    | ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30081051 ggcacacaccgtgcgcattaactgattttggaattttaacaagaaccaaaaaccgaactattaaaccaaactgcaccgcaccgagaaaactgaattt 30081147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 360 - 449
Target Start/End: Original strand, 19167578 - 19167668
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtca-ttttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtc 449  Q
    ||||||| |||||||||||||||||||| ||||| |||| ||||||||||||| ||||| || | |  |||||| ||||||||||||||||    
T  19167578 acaccgacacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtctggtgtc 19167668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 343 - 417
Target Start/End: Original strand, 21319930 - 21320004
Alignment:
Q  343 tgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    |||||||||| ||||  ||| ||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  21319930 tgtccgacaccgacatgacatcgacacttgtgattacattgaattatatcattttttcaaaattttatccgtgtc 21320004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 26205775 - 26205873
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    |||||||| |||||||||||||||||||||||||||||| || ||||| | |  |||||  |||| |||| |||||||||||  |||||| ||||||||    
T  26205775 tgattacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgtccatgtcatgtccggtgtccgtgtctgtgtccatgcttcat 26205873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 19579800 - 19579715
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||  ||||| |||| |||||||||||||||| ||||||| |||||| ||| || | |||||||| |||||||||||    
T  19579800 gtgtcccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaattatgtgattttctcaaa 19579715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 21542129 - 21542056
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    ||||||||||||| |||| ||||| |||||||||| ||||| ||||||| |||||| |||||| ||||||||||    
T  21542129 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 10010613 - 10010555
Alignment:
Q  358 ccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgt 416  Q
    ||||||||| || |||||||||| |||||||||||||||| |||||||||||| |||||    
T  10010613 ccacaccgacacatgtgattacaatgaattatgtcattttttcaaaattttattagtgt 10010555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 354 - 468
Target Start/End: Original strand, 13287395 - 13287509
Alignment:
Q  354 gacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtg 453  Q
    ||||| ||||||| ||||||  ||||| |||||||||| ||||| ||||| | ||||| |||||||| | || |||||  ||||||||| ||||||||||    
T  13287395 gacacgacaccgacacttgtagttacactgaattatgtgattttttcaaattattatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtg 13287494  T
Q  454 ttagtgtccgtgctt 468  Q
    |  || |||||||||    
T  13287495 tccgtatccgtgctt 13287509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 16207601 - 16207654
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgaca 421  Q
    |||||||||||||||||||||||||| |||||| ||||||| | ||||||||||    
T  16207601 acttgtgattacattgaattatgtcaatttctctaaattttgtaagtgtcgaca 16207654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 19167543 - 19167580
Alignment:
Q  298 ggacacttctaattgaaggagtgtcccggtgtctgaca 335  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19167543 ggacacttctaattgaaggagtgtcccggtgtctgaca 19167580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 318 - 471
Target Start/End: Complemental strand, 21522849 - 21522696
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||| | |||| ||||| |||||||||| ||||| ||||||| | |||| |||||| |||||||||| ||||| | ||| | ||| | |||||    
T  21522849 gtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtc 21522750  T
Q  418 gacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    | | | |  |||||  ||||||||| |||| ||||||  || ||||||||||||    
T  21522749 ggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttcat 21522696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 318 - 471
Target Start/End: Complemental strand, 21533415 - 21533262
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||| | |||| ||||| |||||||||| ||||| ||||||| | |||| |||||| |||||||||| ||||| | ||| | ||| | |||||    
T  21533415 gtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtc 21533316  T
Q  418 gacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    | | | |  |||||  ||||||||| |||| ||||||  || ||||||||||||    
T  21533315 ggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttcat 21533262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 30098425 - 30098340
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    |||||| ||||||||||| ||||| |||||||||||||| | | ||||| |  | | ||||||||||||||||| |||||||||||    
T  30098425 gtgtcctggtgtctgacacgtgtcgtgtccgacactgactcgataccgacatctataattacattgaattatgtgattttctcaaa 30098340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 360 - 420
Target Start/End: Original strand, 7621237 - 7621297
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    ||||||||||||||||||||||| |||||||||| ||| |  |||||||||| ||||||||    
T  7621237 acaccgatacttgtgattacattaaattatgtcaatttttttaaattttatctgtgtcgac 7621297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 32444840 - 32444780
Alignment:
Q  343 tgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||| |||||| ||||||| || | |||||||||||||||||||||| ||||||||    
T  32444840 tgtccgacattgacacgacaccgacacatttgattacattgaattatgtcatcttctcaaa 32444780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 371 - 410
Target Start/End: Complemental strand, 42192322 - 42192283
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttat 410  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  42192322 tgtgattacattgaattatgtcattgtctcaaaattttat 42192283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 7677804 - 7677719
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| |||||||| | |||| ||||| ||||| ||||||| |||| | ||| || |||||||||| ||||| |||||    
T  7677804 gtgtcccggtgtcggacatgtgacgtgtcagacaccgacacgacaccgacacttctaattgcactgaattatgtgattttttcaaa 7677719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 35507719 - 35507812
Alignment:
Q  73 atcaggatatgacagctccattgtcgcattattttatatatactggccataactcttatctcactggaaatcaactcagcagtgattgtagtga 166  Q
    |||| |||||||  ||||||||||| |||||||| |||||||| || || || || |  || |||||||||||||| ||||||||||| |||||    
T  35507719 atcatgatatgagtgctccattgtcacattatttcatatatacaggacacaattccttccttactggaaatcaactaagcagtgattgcagtga 35507812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 318 - 418
Target Start/End: Complemental strand, 18592172 - 18592072
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    |||||||| |||| |||| ||||  |||||||||| ||||| ||||||  || | | ||||||||||||||||| ||||||| ||||| ||| | |||||    
T  18592172 gtgtcccgatgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcggtgtc 18592073  T
Q  418 g 418  Q
    |    
T  18592072 g 18592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 292 - 448
Target Start/End: Original strand, 20260469 - 20260624
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    ||||||||||||||||||||| || |||||  || |||  |||| | ||| | ||||| || ||||| | | ||| |||||| | ||| |||||||||||    
T  20260469 ttgcacggacacttctaattggagaagtgtttcgatgttcgacacgggtcgtatccgataccgacacgaaatcgacacttgtaaatactttgaattatgt 20260568  T
Q  392 cattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgt 448  Q
    | |||| | ||||||||||| |||||||| | ||| ||| | ||| |||||||||||    
T  20260569 c-tttttttaaaattttatcggtgtcgacgtgttcttgttagtgttgtgtctggtgt 20260624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 420
Target Start/End: Complemental strand, 309190 - 309155
Alignment:
Q  385 attatgtcattttctcaaaattttatcagtgtcgac 420  Q
    ||||||||||||||||||||||||||| ||||||||    
T  309190 attatgtcattttctcaaaattttatcggtgtcgac 309155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 9031937 - 9031984
Alignment:
Q  370 ttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||| ||||||||||||||||| ||||||| |||||| |||||    
T  9031937 ttgtgattagattgaattatgtcatttcctcaaaaatttatcggtgtc 9031984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 420
Target Start/End: Original strand, 11596470 - 11596517
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    ||||||||||||||||||||||||||||||| | ||||| || |||||    
T  11596470 tgattacattgaattatgtcattttctcaaattattatcggtatcgac 11596517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 28296368 - 28296325
Alignment:
Q  377 tacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggtgtcgac 28296325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 38749580 - 38749627
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtcgacat 422  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||    
T  38749580 attacattgaattatgtcattttttcaaattattatcggtgtcgacat 38749627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 38784855 - 38784812
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||    
T  38784855 acttgtgattacattgaattatatcattttttcacaattttatc 38784812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 401
Target Start/End: Complemental strand, 10009872 - 10009842
Alignment:
Q  371 tgtgattacattgaattatgtcattttctca 401  Q
    |||||||||||||||||||||||||||||||    
T  10009872 tgtgattacattgaattatgtcattttctca 10009842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 16315938 - 16315868
Alignment:
Q  352 ctgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacat 422  Q
    ||||||| |||| ||||| |||| ||||||| |||||| |||||| |||||| | ||||||||||| ||||    
T  16315938 ctgacacaacacagatacatgtggttacattcaattatatcatttcctcaaattattatcagtgtcaacat 16315868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 373 - 403
Target Start/End: Original strand, 43208289 - 43208319
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaa 403  Q
    |||||||||||||||||||||||||||||||    
T  43208289 tgattacattgaattatgtcattttctcaaa 43208319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 15294980 - 15294943
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaat 405  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  15294980 acttgtgattaccttgaattatgtcattttttcaaaat 15294943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 37496829 - 37496704
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    |||||||||||||| | |||||||| ||||||||||||| |||||||||| |||||| ||  ||||| ||||||| ||||||||||||||||||||||||    
T  37496829 ttgcacggacacttatgattgaaggcgtgtcccggtgtccgacatgtgtcgtgtccggcaacgacacaacaccgacacttgtgattacattgaattatgt 37496730  T
Q  392 cattttctcaaaattttatcagtgtc 417  Q
    |||||||||||||  ||||| |||||    
T  37496729 cattttctcaaaaaattatcggtgtc 37496704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 292 - 420
Target Start/End: Complemental strand, 10635116 - 10634987
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatactt-gtgattacattgaattatg 390  Q
    ||||||| || ||||| |||||||   ||||| |||||| |||| || ||||||| ||||| || || ||| ||||| || ||||| |||||||||||||    
T  10635116 ttgcacgaactcttctgattgaagagttgtccgggtgtccgacacgtatcatgtctgacaccgagacaacatcgatattttgtgataacattgaattatg 10635017  T
Q  391 tcattttctcaaaattttatcagtgtcgac 420  Q
    ||||||| |||||||||||||||| |||||    
T  10635016 tcattttttcaaaattttatcagtatcgac 10634987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 13307926 - 13307883
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13307926 acttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 343 - 406
Target Start/End: Original strand, 22799878 - 22799941
Alignment:
Q  343 tgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaatt 406  Q
    |||||||||||||||| |||| || || ||||||||||||||||||||||||||||| ||||||    
T  22799878 tgtccgacactgacacgacactgacacgtgtgattacattgaattatgtcattttctaaaaatt 22799941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 5654606 - 5654655
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagtgtcgacat 422  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  5654606 tgattacattgaattatgtcattttctcaaattattatcagtgtcgacat 5654655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 44362715 - 44362666
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  44362715 acttgtgattacattaaattatgtcattttctcaaaattttatcggtgtc 44362666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 343 - 418
Target Start/End: Complemental strand, 7012140 - 7012065
Alignment:
Q  343 tgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcg 418  Q
    |||||||||| ||||| |||||||||| | |||| ||| |||||||||||||||||||||| | ||||| ||||||    
T  7012140 tgtccgacaccgacacaacaccgatacctatgatcacactgaattatgtcattttctcaaattattatcggtgtcg 7012065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 13117486 - 13117436
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttat 410  Q
    ||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  13117486 acaccgacacttgtgattacattgaattttgtcattttctccaaattttat 13117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 313 - 450
Target Start/End: Original strand, 5414127 - 5414264
Alignment:
Q  313 aaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatca 412  Q
    |||| ||||||| ||||| |||| ||||| |||||||||||||||| |||||||||| | | |||||| || ||| ||| ||||||| ||||  ||| |     
T  5414127 aaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcattttgtgattttctaaaaaaattagct 5414226  T
Q  413 gtgtcgacattttcgtgtcattgtcgtgtctggtgtcc 450  Q
    |||||| | | | ||||||  ||||||||| |||||||    
T  5414227 gtgtcggcgtgtccgtgtccgtgtcgtgtccggtgtcc 5414264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 10546192 - 10546143
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagtgtcgacat 422  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||||||    
T  10546192 tgattacattgaattatgtcattttctcaaattattatcattgtcgacat 10546143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 292 - 397
Target Start/End: Original strand, 11797562 - 11797667
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    |||||| ||||||||| || ||| | ||||||| || ||  ||| |||| ||||| ||||  ||||| ||||||| ||||||||||||||| ||||||||    
T  11797562 ttgcactgacacttctgatcgaaagcgtgtcccagtatccaacacgtgttatgtctgacaacgacacaacaccgacacttgtgattacattaaattatgt 11797661  T
Q  392 catttt 397  Q
    ||||||    
T  11797662 catttt 11797667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 24613661 - 24613746
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    |||||| |||||| |||| ||||| |||| ||||| ||||  ||||||| ||||||  |||||||||||||||| |||||||||||    
T  24613661 gtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaa 24613746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 376 - 417
Target Start/End: Complemental strand, 28663533 - 28663492
Alignment:
Q  376 ttacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatccgtgtc 28663492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 30982838 - 30982923
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| |||| ||||| |||| ||||| ||||| ||||||| |||| | |||||| |||| ||||| |||||||||||    
T  30982838 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgattttctcaaa 30982923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 10164864 - 10164904
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaatttt 408  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  10164864 acttgtgattacattgaattatgtcattttttcaagatttt 10164904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 18513256 - 18513300
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||    
T  18513256 tgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 34589721 - 34589765
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||    
T  34589721 tgattacattgaattatgtcattttctcaaattgttatcggtgtc 34589765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 13484073 - 13484030
Alignment:
Q  368 acttgtgattacatt-gaattatgtcattttctcaaaattttat 410  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||    
T  13484073 acttgtgattacatttgaattatgttattttctcaaaattttat 13484030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 30838302 - 30838207
Alignment:
Q  325 ggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    |||||| |||| |||||  ||||||||||||||| |||||||||||| | |||||| | |||||| | ||||| ||||| | ||| |||| |||||    
T  30838302 ggtgtcggacacgtgtcgcgtccgacactgacacgacaccgatacttataattacactaaattatataattttatcaaattattagcagtatcgac 30838207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 39619047 - 39619090
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgaca 335  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||    
T  39619047 ttgcacggacacttctgattgaaggtgtgtcccggtgtccgaca 39619090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 43188659 - 43188612
Alignment:
Q  370 ttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    |||||||  ||||||||||||||||||||||||| | |||||||||||    
T  43188659 ttgtgatcgcattgaattatgtcattttctcaaattattatcagtgtc 43188612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 51673455 - 51673502
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttatcagtgtcg 418  Q
    |||||||||| ||||||||||||||||||| || | ||||||||||||    
T  51673455 tgtgattacaatgaattatgtcattttctccaattattatcagtgtcg 51673502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 31243563 - 31243609
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagtgtcga 419  Q
    |||||||| |||||||||||||||||||||| | |||| ||||||||    
T  31243563 tgattacactgaattatgtcattttctcaaattattataagtgtcga 31243609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 848050 - 847965
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||  |||| || || ||||||||||  |||  ||||||| |||||| |||| | |||||||||| |||||||||||    
T  848050 gtgtcccggtgttcgacacgtttcgtgtccgacaccaacaagacaccgacacttgtaattatagtgaattatgtaattttctcaaa 847965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 375 - 412
Target Start/End: Complemental strand, 5177026 - 5176989
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatca 412  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  5177026 attacattgaattatgttattttctcaaaatattatca 5176989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 5225573 - 5225658
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||| ||| || |||| || ||||||||||  |||| ||||||| || | | ||| ||||||||||||||||| |||||||    
T  5225573 gtgtcccggggtccgatatgtatcgtgtccgacaccaacacgacaccgacacatattattgcattgaattatgtcattatctcaaa 5225658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 20743293 - 20743338
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagtgtcg 418  Q
    |||||||| |||||||||||||||||||||| | ||||| ||||||    
T  20743293 tgattacactgaattatgtcattttctcaaattattatccgtgtcg 20743338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 360 - 453
Target Start/End: Complemental strand, 21945560 - 21945467
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtg 453  Q
    ||||||| |||||| |||||| |||||||||||||||| ||||| | ||| | |||||| ||| |  |||||  |||| |||| ||||||||||    
T  21945560 acaccgacacttgtaattacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtccggtgtccgtg 21945467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 5e-28; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 343 - 471
Target Start/End: Complemental strand, 1885647 - 1885519
Alignment:
Q  343 tgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtc 442  Q
    ||||||||||  |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||  | | ||| ||| |||||||||    
T  1885647 tgtccgacaccaacacgacaccgacacttgtgattacattgaattatgtcattttttcaaaattttatccgtgtcgatgtgtccgtatcagtgtcgtgtc 1885548  T
Q  443 tggtgtccgtgttagtgtccgtgcttcat 471  Q
     |||||||||||  || ||||||||||||    
T  1885547 cggtgtccgtgtctgtatccgtgcttcat 1885519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 292 - 471
Target Start/End: Original strand, 48963997 - 48964176
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    ||||| |||||||||| ||||||||  |||||||||||  |||| || || ||||| ||||| |||| ||||| | ||||||||||| ||||||||||||    
T  48963997 ttgcatggacacttctgattgaaggtatgtcccggtgttcgacacgtatcgtgtcc-acacttacacgacaccaacacttgtgattaaattgaattatgt 48964095  T
Q  392 cattttctcaaaattttatcagtgtc-gacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    |||||||||| ||||||||| ||| | ||| | |  ||||||||||| |||| |||||  ||||| |||||||||||||||    
T  48964096 cattttctcacaattttatctgtggctgacgtgtctgtgtcattgtcatgtccggtgtatgtgtttgtgtccgtgcttcat 48964176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 301 - 454
Target Start/End: Original strand, 22801684 - 22801837
Alignment:
Q  301 cacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctc 400  Q
    ||||||| |||||||| ||||||| ||||| |||| ||||  |||| ||||||||||  ||||||| ||||||||||||| |||||||||||||| ||||    
T  22801684 cacttctgattgaaggcgtgtcccagtgtccgacaagtgtggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctc 22801783  T
Q  401 aaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgt 454  Q
    ||||||| ||| |||| ||| | | ||||| | |||||| || |||||| ||||    
T  22801784 aaaatttgatcggtgttgacgtgtccgtgttagtgtcgtttccggtgtctgtgt 22801837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 5937431 - 5937479
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgt 416  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5937431 acttgtgattacattgaattatgtcattttctcaaaattttatccgtgt 5937479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 24339741 - 24339656
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| || | ||||| |||||||||| ||||| ||||||| |||||| |||||| |||||||||| ||||| |||||    
T  24339741 gtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaa 24339656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 2144552 - 2144591
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttat 410  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2144552 tgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 417
Target Start/End: Original strand, 35238169 - 35238243
Alignment:
Q  343 tgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    |||||||||| ||||| ||||  | || |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  35238169 tgtccgacacagacacgacactaacacgtgtgattatattgaattatgtcattttctcaaaatattatcggtgtc 35238243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 44317296 - 44317345
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  44317296 acttatgattacattgaattatgtcatttttttaaaattttatcagtgtc 44317345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 2143866 - 2143902
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattt 407  Q
    |||||||||||||||||||||||||||||||||||||    
T  2143866 tgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 292 - 398
Target Start/End: Complemental strand, 25956558 - 25956464
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    |||||||||||||||| |||||||| |||||||| |||| ||||||| || |||||||||| |||||           ||||||||||||||||||||||    
T  25956558 ttgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacac-----------ttgtgattacattgaattatgt 25956471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 38134421 - 38134470
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagtgtcgacat 422  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||| ||||    
T  38134421 tgattacattgaattatgtcattttctcaaattattatcggtgtcaacat 38134470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 44172903 - 44172944
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttatca 412  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  44172903 tgtgattacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 10702561 - 10702604
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtcga 419  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  10702561 attacattgaat-atgtcattttctcaaaattttatcagtatcga 10702604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 13094715 - 13094766
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    ||||||| ||| |||||||||||||||||| |  ||||||||||||||||||    
T  13094715 acaccgacactagtgattacattgaattatatagttttctcaaaattttatc 13094766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 7438790 - 7438720
Alignment:
Q  333 acatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||| |||  ||||| ||||  ||||||| |||||| ||||||||||||||||| ||||| |||||    
T  7438790 acatgtgtcgtgtttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaa 7438720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 9050129 - 9050195
Alignment:
Q  354 gacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    ||||| |||| || || |||||||| |||||| ||||||||||| |||||||||||||  |||||||    
T  9050129 gacacgacacagacacatgtgattatattgaactatgtcattttttcaaaattttatctatgtcgac 9050195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 353 - 403
Target Start/End: Complemental strand, 27945105 - 27945055
Alignment:
Q  353 tgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    |||||| ||||||| |||||| |||||| |||||||||| |||||||||||    
T  27945105 tgacacgacaccgacacttgtaattacactgaattatgtaattttctcaaa 27945055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 36013800 - 36013858
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtca-ttttctcaaaattttatcagtgtc 417  Q
    ||||||| || ||||||||||||||||||||||| |||||||||| | |||||| ||||    
T  36013800 acaccgacacgtgtgattacattgaattatgtcatttttctcaaattattatcattgtc 36013858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 6091371 - 6091334
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttat 410  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  6091371 tgattatattgaattatatcattttctcaaaattttat 6091334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 18678193 - 18678160
Alignment:
Q  372 gtgattacattgaattatgtcattttctcaaaat 405  Q
    ||||||| ||||||||||||||||||||||||||    
T  18678193 gtgattatattgaattatgtcattttctcaaaat 18678160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 21247751 - 21247792
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagt 414  Q
    |||||||||||||||| |||||||||||||| | ||||||||    
T  21247751 tgattacattgaattacgtcattttctcaaattattatcagt 21247792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 381 - 410
Target Start/End: Complemental strand, 31377036 - 31377007
Alignment:
Q  381 ttgaattatgtcattttctcaaaattttat 410  Q
    ||||||||||||||||||||||||||||||    
T  31377036 ttgaattatgtcattttctcaaaattttat 31377007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 32308219 - 32308134
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||| ||||||| |||||||||| ||||| |||| ||||| |||| || || |   |||||| |||||||||| |||||||||||    
T  32308219 gtgtctcggtgtcggacatgtgtcgtgtccaacaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaa 32308134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 7e-27; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 785389 - 785515
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    |||||||||||||||| |||||||| |||||| |||||| ||||    |||||| |||||| ||||| ||||||| ||||||||||||||||||||||||    
T  785389 ttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatgttcgacaccgacacgacaccgacacttgtgattacattgaattatgt 785488  T
Q  392 catt-ttctcaaaattttatcagtgtc 417  Q
    |||| || | |||||||||||||||||    
T  785489 cattattttgaaaattttatcagtgtc 785515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 354 - 417
Target Start/End: Complemental strand, 19369880 - 19369817
Alignment:
Q  354 gacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19369880 gacacgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtc 19369817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 368 - 471
Target Start/End: Complemental strand, 10031619 - 10031522
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgct 467  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| || | || ||||||      |||||||| |||||||  |||||||||||    
T  10031619 acttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacgtgtttgtgtca------tgtctggtatccgtgtctgtgtccgtgct 10031526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 6751884 - 6751935
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6751884 acaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 6751935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 318 - 471
Target Start/End: Original strand, 9107330 - 9107483
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||||| ||||   ||  |||||||||| ||||| ||||||| |||||| |||||| |||||| ||| ||||| ||||| | ||| | |||||    
T  9107330 gtgtcccggtgtcggacacacgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtc 9107429  T
Q  418 gacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    | | | || |||||  ||||||||| ||||||||||| ||| ||||||||||||    
T  9107430 ggcgtgttagtgtccgtgtcgtgtccggtgtccgtgtcagtatccgtgcttcat 9107483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 318 - 471
Target Start/End: Complemental strand, 16766796 - 16766643
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||||| |||| ||||  |||||||||| ||||| ||||||| |||||| |||||| |||||||||| ||||| ||||| | ||| | |||||    
T  16766796 gtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 16766697  T
Q  418 gacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    | | | |  |||||  ||||||||| |||||||||||  || ||| ||||||||    
T  16766696 ggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccatgcttcat 16766643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 5579703 - 5579639
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtca 432  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||    
T  5579703 acttgtgactacattgaactatgtcattttctcaaaattttatcggtgtcgacgtattcgtgtca 5579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 360 - 452
Target Start/End: Complemental strand, 1334718 - 1334626
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgt 452  Q
    ||||||| | ||||||||||||||||||||||| |||| ||||||||||||| ||||| |  | |  |||||| ||||||||| |||||||||    
T  1334718 acaccgacatttgtgattacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgtctgtgtcagtgtcgtgtccggtgtccgt 1334626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 292 - 454
Target Start/End: Original strand, 26402625 - 26402778
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    |||||||||||||||| ||||||| |||||| |||||||  |||||| || |||||||||| |||||           ||||||||||| ||||||||||    
T  26402625 ttgcacggacacttctgattgaagaagtgtctcggtgtccaacatgtatcgtgtccgacaccgacac-----------ttgtgattacactgaattatgt 26402713  T
Q  392 ca--ttttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgt 454  Q
    ||  |||| |||||||||||||| ||||||  | |  |||||| |||| |||| |||||||||||    
T  26402714 cattttttttcaaaattttatcattgtcgatctgtctgtgtcagtgtcatgtccggtgtccgtgt 26402778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 22746041 - 22745963
Alignment:
Q  333 acatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    |||| |||| ||| |||||  ||||| ||||||| |||||||||||||||||| |||  ||||||||||||||||||||    
T  22746041 acatttgtcgtgttcgacagcgacacgacaccgacacttgtgattacattgaaatataacattttctcaaaattttatc 22745963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 29959217 - 29959181
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatc 411  Q
    |||||||||||||||||||||||||||||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattttatc 29959181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 403
Target Start/End: Complemental strand, 10158039 - 10157998
Alignment:
Q  362 accgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaa 10157998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 34868170 - 34868219
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    ||||||||||||||||||||  ||| ||||||||||||||| ||||||||    
T  34868170 tgtgattacattgaattatgatattctctcaaaattttatcggtgtcgac 34868219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 10760828 - 10760903
Alignment:
Q  344 gtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    |||||||||  |||| ||| ||| || |||||||||||| ||| |||||||||||||||| | ||||||||||||||    
T  10760828 gtccgacaccaacacgacatcgacacgtgtgattacattcaat-atgtcattttctcaaattattatcagtgtcgac 10760903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 21395293 - 21395352
Alignment:
Q  343 tgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    |||||||||||||||| ||||||| |||||| |||||| | |||||||| |||||||||||    
T  21395293 tgtccgacactgacacgacaccgacacttgtaattacactaaattatgt-attttctcaaa 21395352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 419
Target Start/End: Original strand, 2140499 - 2140542
Alignment:
Q  376 ttacattgaattatgtcattttctcaaaattttatcagtgtcga 419  Q
    |||||||||||||||||||||||||||| | |||||| ||||||    
T  2140499 ttacattgaattatgtcattttctcaaattattatcaatgtcga 2140542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 4859126 - 4859177
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacat 422  Q
    ||||||||||||| ||||||||||||||||||| | ||||  ||||||||||    
T  4859126 tgtgattacattggattatgtcattttctcaaattattattggtgtcgacat 4859177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 16516998 - 16516947
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    ||||||| ||| |||||||||||||||||| |  ||||||||||||||||||    
T  16516998 acaccgacactagtgattacattgaattatatagttttctcaaaattttatc 16516947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 26178596 - 26178537
Alignment:
Q  293 tgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacac 352  Q
    ||||||||||||||| ||||||||  ||||||| |||| |||| ||||| ||||||||||    
T  26178596 tgcacggacacttctgattgaaggtatgtcccgatgtccgacacgtgtcgtgtccgacac 26178537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 410
Target Start/End: Complemental strand, 31430326 - 31430287
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttat 410  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  31430326 tgtgattacatttaatcatgtcattttctcaaaattttat 31430287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 373 - 403
Target Start/End: Original strand, 9024191 - 9024221
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaa 403  Q
    |||||||||||||||||||||||||||||||    
T  9024191 tgattacattgaattatgtcattttctcaaa 9024221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 294 - 422
Target Start/End: Complemental strand, 24344665 - 24344535
Alignment:
Q  294 gcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtca-tgtccgacactgacaccacaccgatacttgt-gattacattgaattatgt 391  Q
    |||| ||||||| | || ||||| |||||| ||| ||  ||||| |||| || ||||||||||||| ||||| |||| ||| | ||||||  |||||| |    
T  24344665 gcaccgacacttatgatcgaaggggtgtcctggtatccaacatgcgtcagtgcccgacactgacacgacaccaatacatgttggttacatataattatat 24344566  T
Q  392 cattttctcaaaattttatcagtgtcgacat 422  Q
    ||||| ||||||||||||||| ||| |||||    
T  24344565 catttcctcaaaattttatcaatgtagacat 24344535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 332 - 418
Target Start/End: Complemental strand, 26562774 - 26562688
Alignment:
Q  332 gacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcg 418  Q
    |||||||| | ||| |||||| ||||| ||| ||| || | | |||||| |||||||||| ||||||||||| ||||| ||||||||    
T  26562774 gacatgtgccgtgttcgacaccgacacgacatcgacacatataattacactgaattatgtgattttctcaaatttttagcagtgtcg 26562688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 5635903 - 5635940
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttat 410  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  5635903 tgattatattgaattatgtcattttcttaaaattttat 5635940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 368 - 468
Target Start/End: Original strand, 26915250 - 26915349
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgct 467  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||| | | ||||||| |||||| || ||||||||||| ||||||||||||    
T  26915250 acttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgtcagtgtcgtttc-ggtgtccgtgtcagtgtccgtgct 26915348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 292 - 418
Target Start/End: Original strand, 10497750 - 10497876
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    ||||||| |||| ||| |||||||| |||||||||||| |||||||| | |||| |||||| ||||| | || || ||||||||||||||  ||||||||    
T  10497750 ttgcacgaacacctctgattgaaggcgtgtcccggtgtttgacatgtattatgttcgacaccgacacgatactgacacttgtgattacatcaaattatgt 10497849  T
Q  392 cattttctcaaaattttatcagtgtcg 418  Q
     ||||||||||||||||||| ||||||    
T  10497850 tattttctcaaaattttatccgtgtcg 10497876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 419
Target Start/End: Complemental strand, 2652455 - 2652337
Alignment:
Q  300 acacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttct 399  Q
    |||||| | ||||||||  ||| ||||| ||| |||  |||||||||  |||| ||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  2652455 acacttttgattgaaggcatgttccggtatctaacacatgtcatgtcttacacagacaccacatcgacacttgtgattacatt-aattatgtcattttct 2652357  T
Q  400 caaaattttatcagtgtcga 419  Q
     |||| |||||||| |||||    
T  2652356 aaaaaatttatcagggtcga 2652337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 42874571 - 42874497
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtc 442  Q
    |||||||||||||||||||||||||||||||||||||| ||| | |||||||| | | ||||| | |||||||||    
T  42874571 acttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgtgttagtgtcgtgtc 42874497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 22652075 - 22651990
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| ||||  |||| |||||||||| ||||| ||||||| |||||| |||| |||||||||||| ||||| |||||    
T  22652075 gtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaa 22651990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 471
Target Start/End: Original strand, 29510264 - 29510417
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||||| |||| | ||| |||||||||| ||||| ||||||| |||||| |||| | |||||| ||| ||||| ||||| | ||| | |||||    
T  29510264 gtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaattttgtgattttttcaaattattagctgtgtc 29510363  T
Q  418 gacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    | | | |  |||||  ||||||||| ||||||| ||| ||| ||||||||||||    
T  29510364 ggcgtgtcagtgtccgtgtcgtgtccggtgtccatgtcagtatccgtgcttcat 29510417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 27733896 - 27733848
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgt 416  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  27733896 acttgtgattacattgaattatatcattttctcaaaattttatcggtgt 27733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 31119136 - 31119097
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattt 407  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31119136 acttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 360 - 422
Target Start/End: Original strand, 24295139 - 24295201
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacat 422  Q
    ||||||| ||||||||||||||| |||| ||||||||||||| |||||||||  |||||||||    
T  24295139 acaccgacacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtcgacat 24295201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 347 - 420
Target Start/End: Complemental strand, 5307130 - 5307058
Alignment:
Q  347 cgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    |||||| ||||| ||||||| |||| ||||| ||||||||||||||||||| ||||| | ||||||||||||||    
T  5307130 cgacacggacacgacaccgacacttatgatttcattgaattatgtcatttt-tcaaattattatcagtgtcgac 5307058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 29447070 - 29447155
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    |||||| |||||| ||||  |||| |||||||||| ||||  ||||||| ||||||  |||||||||||||||| |||||||||||    
T  29447070 gtgtcctggtgtcagacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaa 29447155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 471
Target Start/End: Complemental strand, 44067558 - 44067462
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    |||||| || ||||||||||||||||||| | ||||| |||||| | | |  |||||  ||| |||||||||||||||||  |||||||||||||||    
T  44067558 attacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtctggtgtccgtgtctgtgtccgtgcttcat 44067462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 6960692 - 6960730
Alignment:
Q  374 gattacattgaattatgtcattttctcaaaattttatca 412  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  6960692 gattacattaaattatgtcattttctcaaaattttatca 6960730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 34073988 - 34074038
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcg 418  Q
    |||| |||||||||| |||||||||||||| ||||||||||||| ||||||    
T  34073988 acttatgattacattaaattatgtcattttttcaaaattttatcggtgtcg 34074038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 410
Target Start/End: Complemental strand, 1639532 - 1639497
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttat 410  Q
    ||||||||||||||||||||||||||||||| ||||    
T  1639532 attacattgaattatgtcattttctcaaaatattat 1639497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 403
Target Start/End: Complemental strand, 21465497 - 21465426
Alignment:
Q  332 gacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    |||| ||||| |||||||||||||||| ||||| | |||||| ||||||| ||||||| | ||||| |||||    
T  21465497 gacacgtgtcgtgtccgacactgacacgacaccaacacttgtaattacatcgaattatatgattttttcaaa 21465426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 399
Target Start/End: Original strand, 24995954 - 24996021
Alignment:
Q  332 gacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttct 399  Q
    |||||||||| ||| | |||  ||||| ||||||||||||| ||||||| |||||||||| |||||||    
T  24995954 gacatgtgtcttgttcaacatagacacgacaccgatacttgcgattacaatgaattatgttattttct 24996021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 31548295 - 31548338
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||| || ||||||||||||||||||||||||||| |||||    
T  31548295 acaccgacacatgtgattacattgaattatgtcattttatcaaa 31548338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 22600578 - 22600536
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttat 410  Q
    ||||||||||| ||||||||||||||||||||  |||||||||    
T  22600578 acttgtgattatattgaattatgtcattttctttaaattttat 22600536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 373 - 403
Target Start/End: Original strand, 29198494 - 29198524
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaa 403  Q
    |||||||||||||||||||||||||||||||    
T  29198494 tgattacattgaattatgtcattttctcaaa 29198524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 34201063 - 34201105
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||||||||||||||||||||| | |||| ||||||    
T  34201063 attacattgaattatgtcattttctcaaattattattagtgtc 34201105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 1591340 - 1591311
Alignment:
Q  376 ttacattgaattatgtcattttctcaaaat 405  Q
    ||||||||||||||||||||||||||||||    
T  1591340 ttacattgaattatgtcattttctcaaaat 1591311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 40332250 - 40332205
Alignment:
Q  358 ccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||| |||||| |||||| |||||||||| |||||||||||    
T  40332250 ccacaccgacacttgtaattacactgaattatgtgattttctcaaa 40332205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 360 - 471
Target Start/End: Original strand, 43586007 - 43586118
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtg 459  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |  |||||| |  |||||| ||||||| |||  |||    
T  43586007 acaccgacacttgtgattacattgaattatgtcattttctcaaaattttatctgtgttgacgtgtcagtgtcagtaccgtgtccggtgtccatgtatgtg 43586106  T
Q  460 tccgtgcttcat 471  Q
    || |||||||||    
T  43586107 tctgtgcttcat 43586118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 13501088 - 13501131
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  13501088 acttgtgattacattgaattatgtcattttcttaaaattttatc 13501131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 14450796 - 14450845
Alignment:
Q  359 cacaccgatacttgtgattacattgaattatgtcattttctcaaaatttt 408  Q
    ||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  14450796 cacactgacacttgtgattacattgaattatgtgattttctcaaaatttt 14450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 24067327 - 24067263
Alignment:
Q  343 tgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattt 407  Q
    |||||||||| ||||  | ||| | ||||||||||||||||||||||||||||||| ||||||||    
T  24067327 tgtccgacaccgacatgaaaccaacacttgtgattacattgaattatgtcattttcacaaaattt 24067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 360 - 468
Target Start/End: Complemental strand, 33884108 - 33884000
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtg 459  Q
    ||||||| |||||| |||||| ||||| |||||||||||||| ||||||||| || ||||  | |  |||||| || |||||||| |||| || || |||    
T  33884108 acaccgacacttgtaattacactgaatcatgtcattttctcacaattttatcggtatcgatgtgtctgtgtcagtgccgtgtctgatgtctgtatttgtg 33884009  T
Q  460 tccgtgctt 468  Q
    |||||||||    
T  33884008 tccgtgctt 33884000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 11439856 - 11439801
Alignment:
Q  356 caccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    ||||| ||| ||||||||||||||| |||||||||| ||||||||| |||||||||    
T  11439856 caccaaaccaatacttgtgattacactgaattatgttattttctcataattttatc 11439801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 18512155 - 18512202
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttatcagtgtcg 418  Q
    ||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  18512155 tgtgattacattgaattatattattttctcaaaattttatcggtgtcg 18512202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 338 - 416
Target Start/End: Original strand, 18420414 - 18420492
Alignment:
Q  338 tgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgt 416  Q
    ||||||||||||||  ||||| ||||||| |||| | ||| ||||||||||||| ||||||||||| | ||| ||||||    
T  18420414 tgtcatgtccgacatggacacaacaccgacacttataattgcattgaattatgtgattttctcaaattattagcagtgt 18420492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 409
Target Start/End: Complemental strand, 24067807 - 24067758
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaatttta 409  Q
    ||||||| |||||||||| |||| ||||||| ||||||||||||||||||    
T  24067807 acaccgacacttgtgatttcatttaattatgacattttctcaaaatttta 24067758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 2356380 - 2356416
Alignment:
Q  380 attgaattatgtcattttctcaaaattttatcagtgt 416  Q
    |||||||||||||||||||||||||||| ||||||||    
T  2356380 attgaattatgtcattttctcaaaatttgatcagtgt 2356416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 14450712 - 14450772
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacac 352  Q
    |||||||||||||||| |||||||  ||||||||||||||||||  |||| |||| |||||    
T  14450712 ttgcacggacacttctgattgaagacgtgtcccggtgtctgacacatgtcctgtctgacac 14450772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 18571016 - 18570968
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattttatcagtgtcgaca 421  Q
    ||||||||||||||||||||||||||||||| | ||||| |||| ||||    
T  18571016 tgattacattgaattatgtcattttctcaaattattatcggtgttgaca 18570968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 37491872 - 37491916
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtcga 419  Q
    |||||||||||||| || |||||||||||||||||||||| ||||    
T  37491872 attacattgaattaagttattttctcaaaattttatcagtatcga 37491916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 410
Target Start/End: Original strand, 14373424 - 14373479
Alignment:
Q  355 acaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttat 410  Q
    |||| ||||||| || |||||||||||||||||||||||||   ||||||||||||    
T  14373424 acacaacaccgacacatgtgattacattgaattatgtcattgcgtcaaaattttat 14373479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 22131256 - 22131315
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcga 419  Q
    ||||||| || |||||||||||||||  |||||||||||||||| |  ||||||||||||    
T  22131256 acaccgacacatgtgattacattgaacaatgtcattttctcaaattactatcagtgtcga 22131315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 10535769 - 10535819
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcg 418  Q
    |||| |||||||| |||||||||||||||||||||| | ||||| ||||||    
T  10535769 acttatgattacactgaattatgtcattttctcaaattattatcggtgtcg 10535819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 372 - 410
Target Start/End: Original strand, 26787812 - 26787850
Alignment:
Q  372 gtgattacattgaattatgtcattttctcaaaattttat 410  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  26787812 gtgattacatcgaattatgtcattttctcaaatttttat 26787850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 30563450 - 30563408
Alignment:
Q  376 ttacattgaattatgtcattttctcaaaattttatcagtgtcg 418  Q
    |||||||||||||||||||||||||||| | ||||| ||||||    
T  30563450 ttacattgaattatgtcattttctcaaattattatccgtgtcg 30563408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 37211895 - 37211937
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttat 410  Q
    |||||| ||||||||||||| |||||||||||| |||||||||    
T  37211895 acttgtaattacattgaattgtgtcattttctcgaaattttat 37211937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 40682024 - 40681982
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||||||||||||||||||||| | ||||| |||||    
T  40682024 attacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 434 - 471
Target Start/End: Original strand, 15907902 - 15907939
Alignment:
Q  434 tgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    |||||||||||||||||||||| || ||||||||||||    
T  15907902 tgtcgtgtctggtgtccgtgtttgtatccgtgcttcat 15907939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 19613630 - 19613675
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    ||||||||||||||||| ||||||||||| | |||| |||||||||    
T  19613630 attacattgaattatgttattttctcaaattattatgagtgtcgac 19613675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 37419842 - 37419757
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| |||| |  || |||||||||| ||||| ||||||  |||||| |||||| |||||| ||| ||||| |||||    
T  37419842 gtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaattttgtgattttttcaaa 37419757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 45000848 - 45000904
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||| || | ||||||||||||||| |||||||||||| |||||||||| |||||    
T  45000848 acaccgacacatatgattacattgaattgtgtcattttctc-aaattttatcggtgtc 45000904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 354 - 454
Target Start/End: Original strand, 18104 - 18198
Alignment:
Q  354 gacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtg 453  Q
    ||||| ||||| | ||||| |||||||||||||||||| ||||||||||||||||||| |||||||      ||||||| ||||||||||||||||||||    
T  18104 gacacaacaccaacacttgcgattacattgaattatgttattttctcaaaattttatcggtgtcga------cgtgtcagtgtcgtgtctggtgtccgtg 18197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 7e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 24462249 - 24462332
Alignment:
Q  337 gtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    |||||||||  |||||  |||| |||| || |||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  24462249 gtgtcatgttagacaccaacacgacactgaaacttgtgattacattgaattatgtcattttttcaaaatttgatcagtgtcgac 24462332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 292 - 414
Target Start/End: Original strand, 51896529 - 51896651
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    |||||| || |||||||||||||   ||||| | |||||||| ||||||| |||||||||| ||||| | | |||  |||| |||||| || |||||| |    
T  51896529 ttgcaccgatacttctaattgaacacgtgtctcagtgtctgatatgtgtcgtgtccgacaccgacacgataacgacgcttgcgattactttaaattattt 51896628  T
Q  392 cattttctcaaaattttatcagt 414  Q
    ||||||||| |||||||||||||    
T  51896629 cattttctctaaattttatcagt 51896651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 370 - 472
Target Start/End: Complemental strand, 16925661 - 16925558
Alignment:
Q  370 ttgtgattacattgaattatgtcattttct-caaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgctt 468  Q
    |||||||||||||||||| ||| ||||| | |||||||||||| || ||||||| | ||||||| |||| ||||  ||| |||||| |||||||||| ||    
T  16925661 ttgtgattacattgaattgtgttatttttttcaaaattttatcggtatcgacatgtccgtgtcagtgtcatgtccagtgcccgtgtcagtgtccgtgttt 16925562  T
Q  469 catc 472  Q
    ||||    
T  16925561 catc 16925558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 14332454 - 14332406
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  14332454 tgtgattacattgaattatgtcattttctc-aaattttatcggtgtcgac 14332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 18946003 - 18946083
Alignment:
Q  327 tgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattt 407  Q
    |||| |||| ||||| |||| ||||| ||||  ||||  | ||| ||||||||||||||||||||||||||||||||||||    
T  18946003 tgtccgacacgtgtcgtgtcagacaccgacaatacactcacactcgtgattacattgaattatgtcattttctcaaaattt 18946083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 40686762 - 40686820
Alignment:
Q  362 accgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    ||||| |||| ||||||||||||||||| ||||||| |||||||||||||  |||||||    
T  40686762 accgacacttatgattacattgaattatatcattttatcaaaattttatcgatgtcgac 40686820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 9629860 - 9629945
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| |||||||||| |||||||||  ||||| ||||||| |||| | || ||| |||||||| | ||||| |||||    
T  9629860 gtgtcccggtgtcggacatgtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatatgattttatcaaa 9629945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 416
Target Start/End: Complemental strand, 40176649 - 40176604
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttatcagtgt 416  Q
    |||||||||||||||| | |||||||||||||||||||||| ||||    
T  40176649 tgtgattacattgaatgaagtcattttctcaaaattttatcggtgt 40176604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 7988461 - 7988513
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    |||| ||||||||||||||||||||| ||||| ||| | ||||||||||||||    
T  7988461 acttatgattacattgaattatgtcactttcttaaattattatcagtgtcgac 7988513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 6427563 - 6427484
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcatttt 397  Q
    ||||||||||||| |||| ||||| |||||||| |  |||| |||| || ||||||  |||||||||||||||| |||||    
T  6427563 gtgtcccggtgtcggacacgtgtcgtgtccgacgcctacacgacactgacacttgtagttacattgaattatgtgatttt 6427484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 40747790 - 40747833
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtcg 418  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||    
T  40747790 attacattgaattatgtcattttctcaaattattatccgtgtcg 40747833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 403
Target Start/End: Complemental strand, 44482311 - 44482244
Alignment:
Q  336 tgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    |||||| |||||||||| ||||| ||||||| || | | |||||| |||||||||| |||||||||||    
T  44482311 tgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaa 44482244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 373 - 403
Target Start/End: Complemental strand, 3921711 - 3921681
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaa 403  Q
    |||||||||||||||||||||||||||||||    
T  3921711 tgattacattgaattatgtcattttctcaaa 3921681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 26462641 - 26462707
Alignment:
Q  354 gacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    ||||| || |||| || |||||||||||| |||||| ||||||||| ||| | ||||||||||||||    
T  26462641 gacactactccgacacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgac 26462707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 28170430 - 28170389
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttat 410  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    
T  28170430 acttgttattacattgaattatgtcatttt-tcaaaattttat 28170389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 31667482 - 31667420
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacat 422  Q
    ||||||| || |||||||||||| |||||||||||||||| ||| | ||| |||||| |||||    
T  31667482 acaccgacacatgtgattacatttaattatgtcattttctaaaattattaccagtgttgacat 31667420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 40917848 - 40917786
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattaca 380  Q
    ||||||||||||| |||| ||||| ||||| |||| ||||| ||||||| |||||| ||||||    
T  40917848 gtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacaccgagacttgtaattaca 40917786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 46914056 - 46914098
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtc 417  Q
    ||||||||||||||||| |||||||||||| | ||||||||||    
T  46914056 attacattgaattatgttattttctcaaaagtatatcagtgtc 46914098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 48547972 - 48548018
Alignment:
Q  345 tccgacactgacaccacaccgatacttgtgattacattgaattatgt 391  Q
    |||||||| ||||| ||||| |||||||| |||||||||||||||||    
T  48547972 tccgacaccgacacgacaccaatacttgtaattacattgaattatgt 48548018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 50233445 - 50233411
Alignment:
Q  373 tgattacattgaattatgtcattttctcaaaattt 407  Q
    ||||||||||||||||||||||||||| |||||||    
T  50233445 tgattacattgaattatgtcattttcttaaaattt 50233411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 9828143 - 9828058
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| |||| ||||| |||| ||||| ||||| ||||||| || |   |||||| |||||||||| ||||| |||||    
T  9828143 gtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaattatgtgattttatcaaa 9828058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 374 - 403
Target Start/End: Complemental strand, 11571628 - 11571599
Alignment:
Q  374 gattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||||||||||||||||||||    
T  11571628 gattacattgaattatgtcattttctcaaa 11571599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 24176869 - 24176820
Alignment:
Q  368 acttgtgattacattgaattatgtca-ttttctcaaaattttatcagtgt 416  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||| ||||    
T  24176869 acttgtgattacattaaatcatgtcatttttctcaaaattttatcggtgt 24176820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 53279 - 53194
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| |||| |||||||||||||||| |||||  |||||| |||| | |||||| |||||||||| |||||||||||    
T  53279 gtgtcccggtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtgattttctcaaa 53194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 360 - 420
Target Start/End: Original strand, 49179717 - 49179777
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 420  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  49179717 acaccgacacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtcgac 49179777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 8039795 - 8039880
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| ||||||| ||||||||||||| ||||| ||||||| || | | |||||| |||||||| | |||||||||||    
T  8039795 gtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacactgaattatataattttctcaaa 8039880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 368 - 468
Target Start/End: Complemental strand, 27903681 - 27903582
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgct 467  Q
    |||| |||||||||| |||||| || |||||||||| | ||||| |||| ||||| || ||||| |||||||||| |||||||||||  |||||||||||    
T  27903681 acttatgattacattaaattatatcgttttctcaaattattatctgtgttgacatattggtgtc-ttgtcgtgtccggtgtccgtgtctgtgtccgtgct 27903583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 34834873 - 34834933
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgacatgtgtcatgtccgacac 352  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||| ||| |||||||||    
T  34834873 ttgcacggacacttctgattgaaggcgtgtcccggtgtccgacatgtatcaagtccgacac 34834933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 14338485 - 14338536
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||||||||    
T  14338485 acaccgacatttgtgattacattgaattatgtcattttttcaaaattttatc 14338536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 14832198 - 14832113
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| |||| ||||| ||||||| || ||||| |||| || |||||| |||||||||| |||||| ||||| |||||    
T  14832198 gtgtcccggtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattacattgagttatgtgattttttcaaa 14832113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 471
Target Start/End: Original strand, 24205058 - 24205154
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    |||||| || ||||||||||||||||||| | ||||| |||||| | | |  |||||  ||||||||| |||||||||||  |||||||||||||||    
T  24205058 attacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcat 24205154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 416
Target Start/End: Complemental strand, 44427905 - 44427841
Alignment:
Q  353 tgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaatt-ttatcagtgt 416  Q
    |||||| ||||||| || ||||||||||||| ||||||||||||||||||| || ||||||||||    
T  44427905 tgacacgacaccgacacatgtgattacattggattatgtcattttctcaaacttattatcagtgt 44427841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 347 - 418
Target Start/End: Complemental strand, 8039276 - 8039205
Alignment:
Q  347 cgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcg 418  Q
    |||||||||||| ||||||| || | |||||||||||||| ||| |||||||||||| | | ||||||||||    
T  8039276 cgacactgacacaacaccgacacctatgattacattgaatcatgccattttctcaaattatcatcagtgtcg 8039205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 15864319 - 15864240
Alignment:
Q  343 tgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacat 422  Q
    |||||||||  ||||| ||||| | |||  |||||| ||||||||||||||||||||||||| |||||| ||||| ||||    
T  15864319 tgtccgacagcgacacgacaccaacactaatgattatattgaattatgtcattttctcaaaactttatccgtgtcaacat 15864240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 42076759 - 42076845
Alignment:
Q  368 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgt 454  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||| || |||   || |||||| ||| || ||||||||| ||||    
T  42076759 acttgtgattacattgaattaggtcattttcccacaattttatcagcgttgacgcgtttgtgtcaatgttgtatctggtgtctgtgt 42076845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 471
Target Start/End: Original strand, 3180793 - 3180871
Alignment:
Q  387 tatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    ||||||||||||| |||||||||||| ||| |||      |||||| |||| |||| |||||||||||| |||||||||||||||    
T  3180793 tatgtcattttcttaaaattttatcattgtagac------gtgtcagtgtcctgtccggtgtccgtgtttgtgtccgtgcttcat 3180871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 4987251 - 4987336
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| |||| ||||| ||||| |||| |||||  |||| | |||||| |||||| |||||||||| ||||| |||||    
T  4987251 gtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaattatgtgattttttcaaa 4987336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 16789097 - 16789040
Alignment:
Q  332 gacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattat 389  Q
    ||||||||||||||||||||||||||| ||||| | |||| | |||||| ||||||||    
T  16789097 gacatgtgtcatgtccgacactgacacgacaccaacacttataattacactgaattat 16789040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 431
Target Start/End: Original strand, 19323461 - 19323521
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtc 431  Q
    |||||||| ||| |||||||||||||||||||| |  ||||||||||||||| || |||||    
T  19323461 tgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgacatgttagtgtc 19323521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 24399660 - 24399704
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtcga 419  Q
    ||||||||||||||||||||| |||||||| |||||||| |||||    
T  24399660 attacattgaattatgtcattgtctcaaaaatttatcagcgtcga 24399704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 52558141 - 52558181
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  52558141 tgtgattacattgaattatgtccttttctcaaatttttatc 52558181  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 397
Target Start/End: Original strand, 34185083 - 34185162
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcatttt 397  Q
    ||||||||||||| ||||  |||| |||||||||  ||||| ||||||| |||||| |||||| |||||| ||| |||||    
T  34185083 gtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaattacactgaattgtgtgatttt 34185162  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 6984821 - 6984771
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttat 410  Q
    |||||||  |||||||||| |||||||| ||| ||||||||||||||||||    
T  6984821 acaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 6984771  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 20691376 - 20691322
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagt 414  Q
    ||||||| || | |||||||| |||||||||||||||||||||| | ||||||||    
T  20691376 acaccgacacatatgattacactgaattatgtcattttctcaaattattatcagt 20691322  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 34910397 - 34910331
Alignment:
Q  337 gtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    |||||||||||||||| || || |||||||  ||||| |||||| |||||||||| ||||| |||||    
T  34910397 gtgtcatgtccgacaccgatacgacaccgactcttgtaattacactgaattatgtgattttttcaaa 34910331  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 371 - 400
Target Start/End: Original strand, 34409355 - 34409384
Alignment:
Q  371 tgtgattacattgaattatgtcattttctc 400  Q
    ||||||||||||||||||||||||||||||    
T  34409355 tgtgattacattgaattatgtcattttctc 34409384  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 49651747 - 49651831
Alignment:
Q  318 gtgtcccggtgtctgacatgtgtcatgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaa 403  Q
    ||||||||||||| || ||||||| ||||||   | ||||| ||||||| |||||| |||||| |||||||||| ||||| |||||    
T  49651747 gtgtcccggtgtcggatatgtgtcgtgtccg-gtccgacacgacaccgacacttgtaattacagtgaattatgtgattttttcaaa 49651831  T

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Target: scaffold0314 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 9005 - 8954
Alignment:
Q  360 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  9005 acaccgacacttgtgattacgttgaattatgtcattttctcaaaattttatc 8954  T

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Target: scaffold0504 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 8682 - 8750
Alignment:
Q  343 tgtccgacactgacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaattttatc 411  Q
    |||| ||||||||||| ||| | | ||||||| ||||||||||| ||||||||||||||||||||||||    
T  8682 tgtctgacactgacacgacaaccacacttgtggttacattgaatcatgtcattttctcaaaattttatc 8750  T

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Target: scaffold0504; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 8647 - 8690
Alignment:
Q  292 ttgcacggacacttctaattgaaggagtgtcccggtgtctgaca 335  Q
    |||||||||||||||| ||||||||  |||||||||||||||||    
T  8647 ttgcacggacacttctgattgaaggcatgtcccggtgtctgaca 8690  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 471
Target Start/End: Original strand, 225285 - 225381
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctggtgtccgtgttagtgtccgtgcttcat 471  Q
    ||||||||| ||||||||||||||||||| | ||||| |||||| | | |  |||||  ||||||||| |||||||||||  ||||||||| |||||    
T  225285 attacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgtttcat 225381  T

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Target: scaffold0571 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 414
Target Start/End: Complemental strand, 7736 - 7693
Alignment:
Q  371 tgtgattacattgaattatgtcattttctcaaaattttatcagt 414  Q
    ||||||| ||||||||||||||||||||||||| | ||||||||    
T  7736 tgtgattgcattgaattatgtcattttctcaaattattatcagt 7693  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 99935 - 99866
Alignment:
Q  375 attacattgaattatgtcattttctcaaaattttatcagtgtcgacattttcgtgtcattgtcgtgtctg 444  Q
    ||||||||||||||||| ||||||| ||| | ||||| |||||||||| | |||||| |  |||||||||    
T  99935 attacattgaattatgttattttctaaaattattatcggtgtcgacatgtccgtgtcgtgttcgtgtctg 99866  T

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