View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5684-Insertion-5 (Length: 476)

Name: NF5684-Insertion-5
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5684-Insertion-5
NF5684-Insertion-5
[»] chr4 (10 HSPs)
chr4 (8-224)||(3438980-3439195)
chr4 (297-476)||(3438793-3438969)
chr4 (59-133)||(1477028-1477102)
chr4 (432-471)||(1553005-1553044)
chr4 (374-473)||(6006094-6006193)
chr4 (385-472)||(55505339-55505426)
chr4 (371-473)||(570115-570217)
chr4 (443-472)||(640751-640780)
chr4 (396-472)||(370716-370792)
chr4 (428-464)||(7226125-7226161)
[»] chr2 (1 HSPs)
chr2 (11-150)||(18288033-18288172)
[»] chr8 (2 HSPs)
chr8 (374-472)||(32151068-32151166)
chr8 (308-364)||(17628353-17628409)
[»] chr1 (1 HSPs)
chr1 (388-472)||(43633978-43634062)
[»] chr3 (1 HSPs)
chr3 (443-472)||(514962-514991)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 3439195 - 3438980
Alignment:
Q  8 gtatataccgtgttcgacattagaaagtggaagattttgtattgacatgagtttaagtgaagcttgcatggataaacatatatggttaataagatctatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3439195 gtatataccgtgttcgacattagaaagtggaagattttgtattgacatgagtttaagtgaagcttgcatggataaacatatatggttaataagctctatt 3439096  T
Q  108 cttaaactagatttatctaatgcagaaataatagcttttgatgcacactataacagctcttgaaaaacccaaggggatcaaagctttgatctaaatatga 207  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3439095 cttgaactagatttatctaatgcag-aataatagcttttgatgcacactataacagctcttgaaaaacccaaggggatcaaagctttgatctaaatatga 3438997  T
Q  208 cctgttgtaatcaaaac 224  Q
    |||||||||||||||||    
T  3438996 cctgttgtaatcaaaac 3438980  T

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Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 297 - 476
Target Start/End: Complemental strand, 3438969 - 3438793
Alignment:
Q  297 atataactatggctccttcatatgtcaaacaaatgatcaaacttcataagagcagtttcaaaatgctaatggaggagaaggcatccacgacgcaagaaaa 396  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||    
T  3438969 atataattatggctccttcatatgtcaaccaaatgatcaaacttcataagagcagtttcaaaatgctaatggag---aaggcatccacgacgcaggaaaa 3438873  T
Q  397 gttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccatctcg 476  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  3438872 gttccctctttttgctactgaaatgataacgaggtggagcagttacctttctcaatgatggctttgaaaataccatctcg 3438793  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 1477102 - 1477028
Alignment:
Q  59 tttaagtgaagcttgcatggataaacatatatggttaataagatctattcttaaactagatttatctaatgcaga 133  Q
    |||||||||||||||||||||||||||| | ||||||| ||| | || |||| ||||||| | ||||||||||||    
T  1477102 tttaagtgaagcttgcatggataaacatctttggttaagaagctgtaatcttgaactagactcatctaatgcaga 1477028  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 1553044 - 1553005
Alignment:
Q  432 ggagcagttacctttctcaatgatggccttgaaaatacca 471  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  1553044 ggagcagttatctttctcaatgatggccttgaaaatacca 1553005  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 473
Target Start/End: Original strand, 6006094 - 6006193
Alignment:
Q  374 aaggcatccacgacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccatc 473  Q
    |||||||||| |||||||||| ||||  | |||  || ||||  ||| | ||| ||| |||||||||| |||||||||||||||||||| ||||||||||    
T  6006094 aaggcatccatgacgcaagaagagttttcgcttgctgtcactacaacaaaaaccaggtggagcagttatctttctcaatgatggccttgtaaataccatc 6006193  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 472
Target Start/End: Complemental strand, 55505426 - 55505339
Alignment:
Q  385 gacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccat 472  Q
    |||||||||| |||| | |||||| | |||| ||| || ||| ||| || || |||| ||||||||||||||||||||||||||||||    
T  55505426 gacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccat 55505339  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 473
Target Start/End: Original strand, 570115 - 570217
Alignment:
Q  371 gagaaggcatccacgacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaatacc 470  Q
    |||||||||| || ||| |||||| || |||||||| |||    ||||||| |||||||| ||| |||||| ||||||||||||||| ||||| |||| |    
T  570115 gagaaggcatacatgacccaagaagagctccctcttgttgttgttgaaacggtaacgaggtggaacagttatctttctcaatgatggtcttgataatatc 570214  T
Q  471 atc 473  Q
    |||    
T  570215 atc 570217  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 472
Target Start/End: Original strand, 640751 - 640780
Alignment:
Q  443 ctttctcaatgatggccttgaaaataccat 472  Q
    ||||||||||||||||||||||||||||||    
T  640751 ctttctcaatgatggccttgaaaataccat 640780  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 472
Target Start/End: Original strand, 370716 - 370792
Alignment:
Q  396 agttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccat 472  Q
    ||||||||||||||| ||  | || ||||| || | ||||||  || |||||| |||||||||||||||||||||||    
T  370716 agttccctctttttgtcatgggaaagataatgaagtggagcaactatctttctgaatgatggccttgaaaataccat 370792  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 464
Target Start/End: Complemental strand, 7226161 - 7226125
Alignment:
Q  428 aggaggagcagttacctttctcaatgatggccttgaa 464  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  7226161 aggaggagcaattatctttctcaatgatggccttgaa 7226125  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 18288172 - 18288033
Alignment:
Q  11 tataccgtgttcgacattagaaagtggaagattttgtattgacatgagtttaagtgaagcttgcatggataaacatatatggttaataagatctattctt 110  Q
    |||||||||||| |||||||||| | ||||||||||| |||| ||| |||||||||||||||||||||||||||||   ||||||| ||| |||| ||||    
T  18288172 tataccgtgttcaacattagaaaatagaagattttgttttgagatgggtttaagtgaagcttgcatggataaacatcgttggttaagaagctctaatctt 18288073  T
Q  111 aaactagatttatctaatgcagaaataatagcttttgatg 150  Q
     ||||||| | |||||||||||||  ||||||| ||||||    
T  18288072 gaactagactcatctaatgcagaagaaatagctattgatg 18288033  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 374 - 472
Target Start/End: Original strand, 32151068 - 32151166
Alignment:
Q  374 aaggcatccacgacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccat 472  Q
    |||||||||| |||||||||| |||| ||| |||||| ||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  32151068 aaggcatccatgacgcaagaagagtttcctttttttgtcactgaaatcataacgaggtggagcagttatctttctcaatgatggccttgaaaataccat 32151166  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 17628409 - 17628353
Alignment:
Q  308 gctccttcatatgtcaaacaaatgatcaaacttcataagagcagtttcaaaatgcta 364  Q
    |||||||| |||||||  ||||||| ||||||||| ||||| | |||||||||||||    
T  17628409 gctccttcgtatgtcacccaaatgaccaaacttcagaagagtaatttcaaaatgcta 17628353  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 472
Target Start/End: Original strand, 43633978 - 43634062
Alignment:
Q  388 gcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccat 472  Q
    ||||||| |||| | |||||||| |||| ||| || ||||||| || ||  ||| ||||||||||||||||||||||||||||||    
T  43633978 gcaagaagagtttcttctttttgtcactcaaatgaaaacgaggtggcgctattatctttctcaatgatggccttgaaaataccat 43634062  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 472
Target Start/End: Complemental strand, 514991 - 514962
Alignment:
Q  443 ctttctcaatgatggccttgaaaataccat 472  Q
    ||||||||||||||||||||||||||||||    
T  514991 ctttctcaatgatggccttgaaaataccat 514962  T

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