View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5684-Insertion-6 (Length: 460)

Name: NF5684-Insertion-6
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5684-Insertion-6
NF5684-Insertion-6
[»] chr3 (7 HSPs)
chr3 (103-460)||(20998515-20998874)
chr3 (104-460)||(9099759-9100115)
chr3 (8-101)||(9099633-9099726)
chr3 (8-101)||(20998906-20998999)
chr3 (8-59)||(20997706-20997757)
chr3 (8-101)||(36164471-36164564)
chr3 (143-208)||(36164336-36164401)
[»] chr2 (2 HSPs)
chr2 (29-101)||(4754932-4755004)
chr2 (8-70)||(4753601-4753663)
[»] chr6 (4 HSPs)
chr6 (8-101)||(18192900-18192993)
chr6 (8-81)||(11020303-11020376)
chr6 (143-208)||(18192765-18192830)
chr6 (249-293)||(31856837-31856880)
[»] chr7 (1 HSPs)
chr7 (8-74)||(41739695-41739761)
[»] chr5 (1 HSPs)
chr5 (8-74)||(38921528-38921594)
[»] chr4 (1 HSPs)
chr4 (8-74)||(30830000-30830066)
[»] chr8 (2 HSPs)
chr8 (8-101)||(32564580-32564673)
chr8 (143-208)||(32564743-32564808)
[»] chr1 (1 HSPs)
chr1 (27-72)||(35063546-35063591)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 103 - 460
Target Start/End: Complemental strand, 20998874 - 20998515
Alignment:
Q  103 aggaccaaaatgaatagaataagttcatcattttttgggtaaagttgaaccaacttcaatcttcatcttcttgatgctgcctctctcaaacctccatcaa 202  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20998874 aggaccaaaatgaatagaataagttcatcaatttttgggtaaagttgaaccaacttcaatcttcatcttcttgatgctgcctctatcaaacctccatcaa 20998775  T
Q  203 gcatcatacttaccgaaacaaccacaaaattccaaatgtcagatctaaacactcaaaatcaaatacttttatattcctttccttttcaaaaattggaaaa 302  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20998774 gcatcatactcaccaaaacaaccacaaaattccaaatgtcagatctaaacactcaaaatcaaatatttttatattcctttccttttcaaaaattggaaaa 20998675  T
Q  303 tatgcatt-atacaaattagggggaaaggcaatcatccagacccatt-nnnnnnnnnccttctcaaattaaaattctctctcaacaccattctaacaaat 400  Q
    |||||||| || ||||||||||  ||| |||||||||||||||||||          |||||||||||||||||||||||||||||| ||||||||||||    
T  20998674 tatgcattaattcaaattagggaaaaatgcaatcatccagacccattaaaacaaaaaccttctcaaattaaaattctctctcaacactattctaacaaat 20998575  T
Q  401 catgtgaattaaaccattattttcattttcaaatagctacactcatctctcttgctcacc 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20998574 catgtgaattaaaccattattttcattttcaaatagctacactcatctctcttgctcacc 20998515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 104 - 460
Target Start/End: Original strand, 9099759 - 9100115
Alignment:
Q  104 ggaccaaaatgaatagaataagttcatcattttttgggtaaagttgaaccaacttcaatcttcatcttcttgatgctgcctctctcaaacctccatcaag 203  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  9099759 ggaccaacatgaatagaataagtccatcattttctgggtaaagttgaagaaacttcaatcttcatcttcttgatgctccctttctc-aacctccatcaag 9099857  T
Q  204 catcatacttaccgaaacaaccacaaaattccaaatgtcagatctaaacactcaaaatcaaatacttttatattcctttccttttcaaaaattggaaaat 303  Q
    ||||||||| ||| ||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||||| || |||||||| |||||||||    
T  9099858 catcatactcaccaaaacaaccacaaaataccaaatttcatatctaaacactcaaaatc-aatacttttatattccttcccatttcaaaacttggaaaat 9099956  T
Q  304 atgcatt-atacaaattagggggaaaggcaatcatccagacccatt-nnnnnnnnnccttctcaaattaaaattctctctcaacaccattctaacaaatc 401  Q
    ||||||| || ||||||||||  ||| |||||||||||||||||||          |||| |||||||||||| ||||||||||||||||||||||||||    
T  9099957 atgcattaatccaaattagggaaaaatgcaatcatccagacccattaaaacaaaaaccttttcaaattaaaatcctctctcaacaccattctaacaaatc 9100056  T
Q  402 atgtgaattaaaccattattttcattttcaaatagctacactcatctctcttgctcacc 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9100057 atgtgaattaaaccattattttcattttcaaatagctacactcatctctcttggtcacc 9100115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 9099633 - 9099726
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaactctggtgatgtatcccaattttttgccacat 101  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  9099633 aaaaactctttcaatgttggttccgttagtcaaataagtccaaaacgttaacttagtgttaactctagtgatgtatcccaattttttgccacat 9099726  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 20998999 - 20998906
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaactctggtgatgtatcccaattttttgccacat 101  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  20998999 aaaaacttcttcaatgttgattccgttagttaaataagtccaaaacgttaacttagtgttaactctggtgatgtatcctaattttttgccacat 20998906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 20997706 - 20997757
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaac 59  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20997706 aaaaactccttcaatgttggtttcgttagtcaaataagtccaaaacgttaac 20997757  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 36164564 - 36164471
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaactctggtgatgtatcccaattttttgccacat 101  Q
    ||||||||  |||||||| ||| ||||||| || | | |||||||||||||||||||||||| |||| |||||| |||  | ||||||||||||    
T  36164564 aaaaactctctcaatgttagttccgttagtcaatttaatccaaaacgttaacttggtgttaagtctgatgatgtgtccataatttttgccacat 36164471  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 36164401 - 36164336
Alignment:
Q  143 aaagttgaaccaacttcaatcttcatcttcttgatgctgcctctctcaaacctccatcaagcatca 208  Q
    |||| ||||| || ||||||||||||||||||  |  | ||||||| |||||||||||||||||||    
T  36164401 aaagatgaacaaagttcaatcttcatcttcttcctcttccctctctaaaacctccatcaagcatca 36164336  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 4755004 - 4754932
Alignment:
Q  29 ttcgttagttaaataagtccaaaacgttaacttggtgttaactctggtgatgtatcccaattttttgccacat 101  Q
    ||||||||| |||| ||||  |||||||||||||||||||||| || |||||| |||| ||||||||||||||    
T  4755004 ttcgttagtcaaattagtctgaaacgttaacttggtgttaactttgatgatgtgtccctattttttgccacat 4754932  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 4753601 - 4753663
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaac 70  Q
    ||||||||| |||||||  |||| |||||| ||||   |||||||||||||||||||||||||    
T  4753601 aaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacgttaacttggtgttaac 4753663  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 18192993 - 18192900
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaactctggtgatgtatcccaattttttgccacat 101  Q
    ||||||||| |||||||| |||  |||||| || | | |||||||||||||||||||||||| |||| |||||| |||  | ||||||||||||    
T  18192993 aaaaactccctcaatgttagttctgttagtcaatttaatccaaaacgttaacttggtgttaagtctgatgatgtgtccataatttttgccacat 18192900  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 11020376 - 11020303
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaactctggtgatgt 81  Q
    ||||||||| |||||||| ||| | ||||| || | | ||||||| |||||||||||||||| |||| ||||||    
T  11020376 aaaaactccctcaatgttagttccattagtcaatttaatccaaaatgttaacttggtgttaagtctgatgatgt 11020303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 18192830 - 18192765
Alignment:
Q  143 aaagttgaaccaacttcaatcttcatcttcttgatgctgcctctctcaaacctccatcaagcatca 208  Q
    |||| ||||| || ||||||||||||||||||  |  | ||||||||||| |||||||||||||||    
T  18192830 aaagatgaacaaagttcaatcttcatcttcttcctcttccctctctcaaatctccatcaagcatca 18192765  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 31856880 - 31856837
Alignment:
Q  249 aaacactcaaaatcaaatacttttatattcctttccttttcaaaa 293  Q
    |||||||||||||| | |||||||||||| |||||||||||||||    
T  31856880 aaacactcaaaatcta-tacttttatatttctttccttttcaaaa 31856837  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 41739695 - 41739761
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaactctg 74  Q
    |||||||||  ||||| | ||||||||||| ||||   |||||||||||||||||||||||||||||    
T  41739695 aaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctg 41739761  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 38921528 - 38921594
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaactctg 74  Q
    |||||||||  ||||| | ||||||||||| ||||   |||||||||||||||||||||||||||||    
T  38921528 aaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctg 38921594  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 30830000 - 30830066
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaactctg 74  Q
    |||||||||  ||||| | ||||||||||| ||||   |||||||||||||||||||||||||||||    
T  30830000 aaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctg 30830066  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 32564580 - 32564673
Alignment:
Q  8 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaactctggtgatgtatcccaattttttgccacat 101  Q
    ||||||||| |||||||| ||| | | ||| || | | |||||||||||||||||||||||| |||| |||||| |||  | ||||||||||||    
T  32564580 aaaaactccctcaatgttagttccatcagtcaatttaatccaaaacgttaacttggtgttaaatctgatgatgtgtccataatttttgccacat 32564673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 32564743 - 32564808
Alignment:
Q  143 aaagttgaaccaacttcaatcttcatcttcttgatgctgcctctctcaaacctccatcaagcatca 208  Q
    |||| ||||| || ||||||||||||||||||  |  | ||||||| |||||||||||||||||||    
T  32564743 aaagatgaacaaagttcaatcttcatcttcttcctcttccctctctaaaacctccatcaagcatca 32564808  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 35063591 - 35063546
Alignment:
Q  27 gtttcgttagttaaataagtccaaaacgttaacttggtgttaactc 72  Q
    ||||||||||| ||||   |||||||||||||||||||||||||||    
T  35063591 gtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactc 35063546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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