View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5684-Insertion-7 (Length: 435)

Name: NF5684-Insertion-7
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5684-Insertion-7
NF5684-Insertion-7
[»] chr1 (4 HSPs)
chr1 (71-435)||(35267827-35268193)
chr1 (201-305)||(9906275-9906380)
chr1 (222-305)||(18703503-18703586)
chr1 (7-86)||(35267817-35267896)
[»] chr8 (7 HSPs)
chr8 (202-305)||(7275603-7275707)
chr8 (7-71)||(26175160-26175224)
chr8 (201-304)||(26174996-26175097)
chr8 (90-144)||(4677500-4677554)
chr8 (71-142)||(26175143-26175214)
chr8 (36-86)||(4677504-4677554)
chr8 (7-60)||(7275475-7275529)
[»] chr7 (7 HSPs)
chr7 (201-305)||(41832181-41832286)
chr7 (201-304)||(34512398-34512499)
chr7 (81-182)||(219392-219493)
chr7 (219-304)||(7736904-7736989)
chr7 (222-256)||(219486-219520)
chr7 (262-304)||(7734889-7734931)
chr7 (7-44)||(34512592-34512629)
[»] chr3 (6 HSPs)
chr3 (201-301)||(10745186-10745287)
chr3 (201-304)||(42657261-42657362)
chr3 (203-292)||(4606961-4607048)
chr3 (7-79)||(4607172-4607244)
chr3 (82-142)||(4607163-4607223)
chr3 (70-142)||(42656483-42656555)
[»] chr2 (5 HSPs)
chr2 (201-305)||(24039034-24039139)
chr2 (201-305)||(31269919-31270024)
chr2 (70-182)||(36316582-36316695)
chr2 (222-354)||(36316688-36316821)
chr2 (17-86)||(36316583-36316653)
[»] chr5 (7 HSPs)
chr5 (201-304)||(35305074-35305178)
chr5 (215-305)||(21256195-21256285)
chr5 (100-182)||(17823209-17823291)
chr5 (203-292)||(41949893-41949980)
chr5 (71-142)||(41949706-41949777)
chr5 (46-86)||(17823251-17823291)
chr5 (70-142)||(35304956-35305028)
[»] scaffold0525 (1 HSPs)
scaffold0525 (203-305)||(6382-6485)
[»] chr4 (6 HSPs)
chr4 (205-331)||(55850240-55850366)
chr4 (201-325)||(11814679-11814804)
chr4 (219-304)||(5444315-5444400)
chr4 (7-79)||(5444427-5444499)
chr4 (71-142)||(5444418-5444489)
chr4 (129-178)||(40659811-40659861)
[»] scaffold1412 (2 HSPs)
scaffold1412 (201-304)||(242-343)
scaffold1412 (7-79)||(78-150)
[»] scaffold0001 (2 HSPs)
scaffold0001 (201-304)||(145101-145202)
scaffold0001 (7-79)||(144976-145048)
[»] chr6 (2 HSPs)
chr6 (201-304)||(6823514-6823615)
chr6 (7-79)||(6823350-6823422)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 71 - 435
Target Start/End: Original strand, 35267827 - 35268193
Alignment:
Q  71 caacacttatccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacacttaaccaccaagcagaaactgtatgtcaagtttaaccact 170  Q
    |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35267827 caacgcttaaccaccatccggcagaagcaatcatcaacaatgccaattaaggcacaacacttaaccaccaagcagaaactgtatgtcaagtttaaccact 35267926  T
Q  171 tggcagaagcacnnnnnnnnnnnnnnnnng--cgacgcttaaccatcttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacat 268  Q
    ||||||||||||                    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35267927 tggcagaagcacaaaaaaaaaaaaaaaaaaaacgacgattaaccatcttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacat 35268026  T
Q  269 ggcttaaccatcatgaacagaagcacaacacaagaagcaaagccagcatatgctaataagaaaaatgaagaagaaagccatggacagaaactattaccac 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35268027 ggcttaaccatcatgaacagaagcacaacacaagaagcaaagccagcataggctaataagaaaaatgaagaagaaagccatggacagaaactattaccac 35268126  T
Q  369 agtatgacaggaaaactcaatgagcttcaaacataatggatcctccaacaatgaagcttcaaaatat 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35268127 agtatgacaggaaaactcaatgagcttcaaacataatggatcctccaacaatgaagcttcaaaatat 35268193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 9906275 - 9906380
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  9906275 cgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 9906374  T
Q  300 aagaag 305  Q
    ||||||    
T  9906375 aagaag 9906380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 18703503 - 18703586
Alignment:
Q  222 agaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaag 305  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  18703503 agaagcacaacgacgcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaaacacaagacaagaag 18703586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 35267817 - 35267896
Alignment:
Q  7 agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacacttatccacca 86  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  35267817 agcatcaaagcaacgcttaaccaccatccggcagaagcaatcatcaacaatgccaattaaggcacaacacttaaccacca 35267896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 202 - 305
Target Start/End: Original strand, 7275603 - 7275707
Alignment:
Q  202 gacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacaca 300  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  7275603 gacgcttaaccatccttggacagaagcacaacgacgcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagaca 7275702  T
Q  301 agaag 305  Q
    |||||    
T  7275703 agaag 7275707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 26175224 - 26175160
Alignment:
Q  7 agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagccaattaaggcac 71  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  26175224 agcatcaaagcaacgcttaaccaccatccggtagaagcaatcatcaacaaagccaattaaggcac 26175160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 26175097 - 26174996
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    |||| |||||||||| ||||| |||||||||||   |||||||||||||||||  |||||||||||||||||| | ||||||||||||||||||||| ||    
T  26175097 cgacacttaaccatccttggacagaagcacaac---gcttaaccattcatgacgaaagcttatcaacatggctgatccatcatgaacagaagcacaaaac 26175001  T
Q  300 aagaa 304  Q
    |||||    
T  26175000 aagaa 26174996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 4677554 - 4677500
Alignment:
Q  90 ggcagaagcaatcatcaacaaagccaattaaggcacaacacttaaccaccaagca 144  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4677554 ggcagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccaccaagca 4677500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 26175214 - 26175143
Alignment:
Q  71 caacacttatccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacacttaaccaccaag 142  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  26175214 caacgcttaaccaccatccggtagaagcaatcatcaacaaagccaattaaggcaccacgcttaaccatcaag 26175143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 4677554 - 4677504
Alignment:
Q  36 ggcagaagcaatcatcaacaaagccaattaaggcacaacacttatccacca 86  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  4677554 ggcagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccacca 4677504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 7275475 - 7275529
Alignment:
Q  7 agcatcaaagcaacgctcaaccaccatccggcagaag-caatcatcaacaaagcc 60  Q
    |||| |||| ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  7275475 agcagcaaaccaacgcttaaccaccatccggtagaagccaatcatcaacaaagcc 7275529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 41832286 - 41832181
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  41832286 cgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 41832187  T
Q  300 aagaag 305  Q
    ||||||    
T  41832186 aagaag 41832181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 34512499 - 34512398
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||||||| ||||| |||||||||||   ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||    
T  34512499 cgacgcttaaccatccttggacagaagcacaac---gcttaaccattcatgacagaagcttattaacatagcttaaccatcatgaacagaagcacaagac 34512403  T
Q  300 aagaa 304  Q
    |||||    
T  34512402 aagaa 34512398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 219392 - 219493
Alignment:
Q  81 ccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacacttaaccaccaagcagaaactgtatgtcaagtttaaccacttggcagaagc 180  Q
    |||||||| ||||||||   |||||||||||| |||||| || ||||| ||||||||||||| ||||||| |||| | ||||||||||||||||||||||    
T  219392 ccaccatctggcagaagttgtcatcaacaaagacaattaggggacaacgcttaaccaccaagtagaaactatatgaccagtttaaccacttggcagaagc 219491  T
Q  181 ac 182  Q
    ||    
T  219492 ac 219493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 7736989 - 7736904
Alignment:
Q  219 gatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaa 304  Q
    ||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| || |||||||||||||| ||||| || |||||||    
T  7736989 gatagaagcacaataactcttaaccgttcatgatagaagcttatcaatatgactgaaccatcatgaacaaaagcataatacaagaa 7736904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 219486 - 219520
Alignment:
Q  222 agaagcacaacaacgcttaaccattcatgacagaa 256  Q
    |||||||||||||||||||||||| ||||||||||    
T  219486 agaagcacaacaacgcttaaccatccatgacagaa 219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 7734931 - 7734889
Alignment:
Q  262 tcaacatggcttaaccatcatgaacagaagcacaacacaagaa 304  Q
    |||||||| || ||||||||||||||||||||||| |||||||    
T  7734931 tcaacatgactgaaccatcatgaacagaagcacaagacaagaa 7734889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 34512629 - 34512592
Alignment:
Q  7 agcatcaaagcaacgctcaaccaccatccggcagaagc 44  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  34512629 agcatcaaagcaacgcttaaccaccatccggtagaagc 34512592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 10745287 - 10745186
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  10745287 cgacgcttaacaatccttggatagaagcacaacaacacttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaatcacaatac 10745188  T
Q  300 aa 301  Q
    ||    
T  10745187 aa 10745186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 42657261 - 42657362
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||||||| ||||| ||||||||||   |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||    
T  42657261 cgacgcttaaccatccttggacagaagcacaa---cgcttaaccattcatgacagaagcctatcaacatagcttaaccatcatgaacagaagtacaagac 42657357  T
Q  300 aagaa 304  Q
    |||||    
T  42657358 aagaa 42657362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 292
Target Start/End: Complemental strand, 4607048 - 4606961
Alignment:
Q  203 acgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagc 292  Q
    ||||||||||||| ||||  |||||||||||||||||||||||| ||||| ||||||    ||||| ||||||||||||||| ||||||||    
T  4607048 acgcttaaccatccttggccagaagcacaacaacgcttaaccatccatgatagaagc---acaacaaggcttaaccatcatggacagaagc 4606961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 4607244 - 4607172
Alignment:
Q  7 agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacactta 79  Q
    ||||||||||||||||| || |||||||||| |||||| | |||| ||||||||||||| |||||||| ||||    
T  4607244 agcatcaaagcaacgcttaaacaccatccggtagaagccaacatcgacaaagccaattagggcacaacgctta 4607172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 4607223 - 4607163
Alignment:
Q  82 caccatccggcagaagcaatcatcaacaaagccaattaaggcacaacacttaaccaccaag 142  Q
    |||||||||| |||||| | |||| ||||||||||||| |||||||| |||||||| ||||    
T  4607223 caccatccggtagaagccaacatcgacaaagccaattagggcacaacgcttaaccatcaag 4607163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 42656483 - 42656555
Alignment:
Q  70 acaacacttatccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacacttaaccaccaag 142  Q
    ||||| |||| ||||||||||| |||||| | || | |||||||||   ||||||||||||||||||| ||||    
T  42656483 acaacgcttaaccaccatccggtagaagccaacaaccacaaagccataaaaggcacaacacttaaccatcaag 42656555  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 24039139 - 24039034
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  24039139 cgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 24039040  T
Q  300 aagaag 305  Q
    ||||||    
T  24039039 aagaag 24039034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 31269919 - 31270024
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| ||    
T  31269919 cgacgcttaaccatccttggacagaagcacaacgacgcttaaccattaatgacaaaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 31270018  T
Q  300 aagaag 305  Q
    ||||||    
T  31270019 aagaag 31270024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 36316582 - 36316695
Alignment:
Q  70 acaacacttatccaccatccggcagaagcaatcatc-aacaaagccaattaaggcacaacacttaaccaccaagcagaaactgtatgtcaagtttaacca 168  Q
    ||||| |||| |||||||| || |||||||| || | ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  36316582 acaacgcttaaccaccatctggtagaagcaaacaaccaacaaagccaattaaggcacaacgcttaaccaccaagcagaaactatatgtaaagtttaacca 36316681  T
Q  169 cttggcagaagcac 182  Q
    ||| ||||||||||    
T  36316682 cttagcagaagcac 36316695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 354
Target Start/End: Original strand, 36316688 - 36316821
Alignment:
Q  222 agaagcacaacaacgcttaaccattcatgacagaagcttatcaacat-ggcttaaccatcatgaacagaagcacaacacaagaagcaaagccagcatatg 320  Q
    |||||||||| ||| ||||||||| ||||||||| ||  | |||||  ||||||||||||||| ||  |||||||| |||||||  ||||||| |||| |    
T  36316688 agaagcacaataacacttaaccatccatgacagaggcacaacaacaaaggcttaaccatcatggactaaagcacaaaacaagaatgaaagccatcatagg 36316787  T
Q  321 ctaataagaaaaatgaagaagaaagccatggaca 354  Q
    ||||||||||| |||| |||| ||||||||||||    
T  36316788 ctaataagaaagatgaggaagtaagccatggaca 36316821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 36316583 - 36316653
Alignment:
Q  17 caacgctcaaccaccatccggcagaagcaatcatc-aacaaagccaattaaggcacaacacttatccacca 86  Q
    ||||||| |||||||||| || |||||||| || | ||||||||||||||||||||||| |||| ||||||    
T  36316583 caacgcttaaccaccatctggtagaagcaaacaaccaacaaagccaattaaggcacaacgcttaaccacca 36316653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 35305074 - 35305178
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||||| ||    
T  35305074 cgacgcttaaccatccttggacagaagcacaacaacgcttaactattcatgacggaagcatatcaacatgtcttaaccatcatgaacagaagcacaagac 35305173  T
Q  300 aagaa 304  Q
    |||||    
T  35305174 aagaa 35305178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 21256285 - 21256195
Alignment:
Q  215 cttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaag 305  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  21256285 cttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaag 21256195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 17823291 - 17823209
Alignment:
Q  100 atcatcaacaaagccaattaaggcacaacacttaaccaccaagcagaaactgtatgtcaagtttaaccacttggcagaagcac 182  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  17823291 atcatcaacaaagccgattaaggcacaacgcttaaccaccaagcagaaactatatgtcgagttttaccacttggcagaagcac 17823209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 292
Target Start/End: Original strand, 41949893 - 41949980
Alignment:
Q  203 acgcttaaccatct-tggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagc 292  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||    ||||| ||||||||||||||| ||||||||    
T  41949893 acgcttaaccatccgtggatagaagcacaacaacgcttaaccatccatgacagaagc---acaacaaggcttaaccatcatggacagaagc 41949980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 41949706 - 41949777
Alignment:
Q  71 caacacttatccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacacttaaccaccaag 142  Q
    ||||||||| ||||||||||| |||||| | |||| |||||||||   |||||||||| |||||||| ||||    
T  41949706 caacacttaaccaccatccggtagaagccaacatcgacaaagccataaaaggcacaacgcttaaccatcaag 41949777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 17823291 - 17823251
Alignment:
Q  46 atcatcaacaaagccaattaaggcacaacacttatccacca 86  Q
    ||||||||||||||| ||||||||||||| |||| ||||||    
T  17823291 atcatcaacaaagccgattaaggcacaacgcttaaccacca 17823251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 35304956 - 35305028
Alignment:
Q  70 acaacacttatccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacacttaaccaccaag 142  Q
    ||||| |||| ||||||||||| |||||||| || | |||||||||   |||||||||| |||||||| ||||    
T  35304956 acaacgcttaaccaccatccggtagaagcaaacaaccacaaagccataaaaggcacaacgcttaaccatcaag 35305028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 305
Target Start/End: Original strand, 6382 - 6485
Alignment:
Q  203 acgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaa 301  Q
    |||||| |||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  6382 acgcttgaccatccttggacagaagcacaacgacgcttaaccattcatgacaaaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaa 6481  T
Q  302 gaag 305  Q
    ||||    
T  6482 gaag 6485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 55850240 - 55850366
Alignment:
Q  205 gcttaaccatcttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaa 304  Q
    ||||||||||| | || |||||| |||||||||||||||||||||||  ||||| |||||||||| |||||||||||||||||||||||||| |||||||    
T  55850240 gcttaaccatcatagacagaagctcaacaacgcttaaccattcatgatggaagcatatcaacatgtcttaaccatcatgaacagaagcacaagacaagaa 55850339  T
Q  305 gcaaagccagcatatgctaataagaaa 331  Q
     |||||| | |||| ||||| ||||||    
T  55850340 tcaaagctatcataggctaacaagaaa 55850366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 201 - 325
Target Start/End: Complemental strand, 11814804 - 11814679
Alignment:
Q  201 cgacgcttaaccatctt-ggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||||||||| ||| ||||||||||||||||  |||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| ||    
T  11814804 cgacgcttaaccatctttggacagaagcacaacaacgccaaaccattcatgacgaaagcctatcaacatggcttaaccatcatgaacagaagcacaagac 11814705  T
Q  300 aagaagcaaagccagcatatgctaat 325  Q
    || ||| ||| ||| |||| ||||||    
T  11814704 aataagtaaaaccatcataggctaat 11814679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 5444400 - 5444315
Alignment:
Q  219 gatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaa 304  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||| || |||||||    
T  5444400 gatagaagcacaataacgcttaaccattcatgacggaagcgtatcaacatggctgatccatcatgaacagaagcagaagacaagaa 5444315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 5444499 - 5444427
Alignment:
Q  7 agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacactta 79  Q
    |||| |||||||||||| ||||||||||||| |||||| | ||||||||||||||   |||||||||| ||||    
T  5444499 agcaacaaagcaacgcttaaccaccatccggtagaagccaacatcaacaaagccataaaaggcacaacgctta 5444427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 5444489 - 5444418
Alignment:
Q  71 caacacttatccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacacttaaccaccaag 142  Q
    |||| |||| ||||||||||| |||||| | ||||||||||||||   |||||||||| |||||||| ||||    
T  5444489 caacgcttaaccaccatccggtagaagccaacatcaacaaagccataaaaggcacaacgcttaaccatcaag 5444418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 40659811 - 40659861
Alignment:
Q  129 acttaaccaccaagcagaaactgtatgtc-aagtttaaccacttggcagaa 178  Q
    |||||||||||||||||||||| ||  || |||||||||||||||||||||    
T  40659811 acttaaccaccaagcagaaactataactcaaagtttaaccacttggcagaa 40659861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 242 - 343
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||||||| ||||| ||||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  242 cgacgcttaaccatccttggacagaagcacaat---gcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 338  T
Q  300 aagaa 304  Q
    |||||    
T  339 aagaa 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 78 - 150
Alignment:
Q  7 agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacactta 79  Q
    ||||||||||||||||| ||||||||||||| |||||| |  ||| |||||||||   |||||||||| ||||    
T  78 agcatcaaagcaacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgctta 150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 145101 - 145202
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||||||| ||||| ||||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  145101 cgacgcttaaccatccttggacagaagcacaat---gcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 145197  T
Q  300 aagaa 304  Q
    |||||    
T  145198 aagaa 145202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 144976 - 145048
Alignment:
Q  7 agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacactta 79  Q
    ||||||||||||||||| ||||||||||||| |||||| |  ||| |||||||||   |||||||||| ||||    
T  144976 agcatcaaagcaacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgctta 145048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 6823514 - 6823615
Alignment:
Q  201 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 299  Q
    ||||||||||| ||| ||||| ||||||||||   |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  6823514 cgacgcttaacaatccttggacagaagcacaa---cgcttaaccattcatgccagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 6823610  T
Q  300 aagaa 304  Q
    |||||    
T  6823611 aagaa 6823615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 6823350 - 6823422
Alignment:
Q  7 agcatcaaagcaacgctcaaccaccatccggcagaagcaatcatcaacaaagccaattaaggcacaacactta 79  Q
    ||||||||||||||||| ||||||||||||| |||||| |  ||| |||||||||   |||||||||| ||||    
T  6823350 agcatcaaagcaacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgctta 6823422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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