View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684-Insertion-9 (Length: 371)
Name: NF5684-Insertion-9
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 39662244 - 39661997
Alignment:
| Q |
8 |
cttctctcatatttctccttataaaaaagccagctcgtgcaattctcttacccttttgttttgctctctcgctcgtaatcgaacaatctcatcctcacag |
107 |
Q |
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| T |
39662244 |
cttctctcatatttctccttataaaaaagccagctcgtgcaattctcttacccttttgttttgctctctcgctcgtaatcgaacaatctcatcctcacag |
39662145 |
T |
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| Q |
108 |
tttcgtattcttcccgatctcaccaccactgtaagtcttcatcatccacttccaattcctaaccctaatttctagattcaatcctaatttcacagatccc |
207 |
Q |
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| T |
39662144 |
tttcgtattcttcccgatctcaccaccactgtaagtcttcatcatccacttccaattcctaaccctaatttctagattcaatcctaatttcacagatccc |
39662045 |
T |
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| Q |
208 |
taattcttttgatttcatcgatcgtttttataccgaattattcagctt |
255 |
Q |
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| T |
39662044 |
taattcttttgatttcatcgatcgtttttataccgaattattcagctt |
39661997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 22596164 - 22596208
Alignment:
| Q |
89 |
aacaatctcatcctcacagtttcgtattcttcccgatctcaccac |
133 |
Q |
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||||||||| ||||||||||||| | |||||| |||||||||||| |
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| T |
22596164 |
aacaatctcctcctcacagtttcattttcttctcgatctcaccac |
22596208 |
T |
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