View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_high_10 (Length: 445)
Name: NF5684_high_10
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 442
Target Start/End: Original strand, 5509186 - 5509614
Alignment:
| Q |
6 |
aaaccattacattgtggctgcaattacgatatttgttaggatatatagttagtagtgggatttgacatagtataatgttatctgttagtaataggaaacc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
5509186 |
aaaccattacattgtggctgcaattacgatatttgttaggatatatagttagtactgggatttgacatagtataatgttatctgttagtgatagaaaacc |
5509285 |
T |
|
| Q |
106 |
taattattcaatatcaaaatcaaaaaagaatatgttagaataattagaggtgtcattaggaaatgtaactagttagaggagactggtaaatatacagttt |
205 |
Q |
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| T |
5509286 |
taattattcaatatcaaaatcaaaa-------tgttagaat---tagaggtgtcattaggaaatgtaactagttagaggagactagtaaacatacagttt |
5509375 |
T |
|
| Q |
206 |
actcttgttgtgttccattgttccacactaccaaagttctatttctctttattcagg--tctcacgtataatttctaaactcgaaccttcattcttacca |
303 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
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| T |
5509376 |
actcttgttgtgttccattgttccaccctaccaaagttccatttctctttattcaggactctcaggtataatttctagactcgaaccttcattcttacca |
5509475 |
T |
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| Q |
304 |
tttgtgttttaacattttatacagatattgaacctcctgaagtataccttaacctctcatgagcctctcacaaatacaattttgcaaagtagctcaaaga |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5509476 |
tttgtgttttaacattttatacagatattgaacctcctgaagtataccttaacctctcatgagcctctcactaatacaattttgcaaagtagctcaaaga |
5509575 |
T |
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| Q |
404 |
acaatgacgaaccacgtaaccaatatgttaatggaatag |
442 |
Q |
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| T |
5509576 |
acaatgatgaaccacgtaaccaatatgttaatggaatag |
5509614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 301 - 407
Target Start/End: Complemental strand, 5458225 - 5458119
Alignment:
| Q |
301 |
ccatttgtgttttaacattttatacagatattgaacctcctgaagtataccttaacctctcatgagcctctcacaaatacaattttgcaaagtagctcaa |
400 |
Q |
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|||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
5458225 |
ccatttatgttttaacattttgtatagatattgaacctcctcaagtataccttaacctctcatgagcctctcacaaatacgattttgggaagtagctcaa |
5458126 |
T |
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| Q |
401 |
agaacaa |
407 |
Q |
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||||||| |
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| T |
5458125 |
agaacaa |
5458119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 387
Target Start/End: Original strand, 5488780 - 5488873
Alignment:
| Q |
294 |
attcttaccatttgtgttttaacattttatacagatattgaacctcctgaagtataccttaacctctcatgagcctctcacaaatacaattttg |
387 |
Q |
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| T |
5488780 |
attcttaccttttgtgttttaacattttgtacagatattgaaccttctcaagtatgccttaacctctcgtgagcctttgacaaatacaattttg |
5488873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 297 - 407
Target Start/End: Complemental strand, 5436337 - 5436227
Alignment:
| Q |
297 |
cttaccatttgtgttttaacattttatacagatattgaacctcctgaagtataccttaacctctcatgagcctctcacaaatacaattttgcaaagtagc |
396 |
Q |
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||||| |||||||||||||||| || || |||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||| |||| ||||||| |
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| T |
5436337 |
cttactatttgtgttttaacatattctatagatattgaacctcctcaagcataccttaacctctcatgagcctttgacaaatacattttttgcaagtagc |
5436238 |
T |
|
| Q |
397 |
tcaaagaacaa |
407 |
Q |
| |
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|| |||||||| |
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| T |
5436237 |
tccaagaacaa |
5436227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 332 - 406
Target Start/End: Original strand, 5631659 - 5631733
Alignment:
| Q |
332 |
tgaacctcctgaagtataccttaacctctcatgagcctctcacaaatacaattttgcaaagtagctcaaagaaca |
406 |
Q |
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| T |
5631659 |
tgaacctcctcaagtacaccttaacctctcatgagcctctgacaaatacaattttgaaaagtagctcaaagaaca |
5631733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 407
Target Start/End: Complemental strand, 5996775 - 5996691
Alignment:
| Q |
323 |
tacagatattgaacctcctgaagtataccttaacctctcatgagcctctcacaaatacaattttgcaaagtagctcaaagaacaa |
407 |
Q |
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| T |
5996775 |
tacagatgctgaacctcctcaagtacaccttaacctctcatgagcctctgacaaatacaattttgaaaagcagctccaagaacaa |
5996691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 407
Target Start/End: Complemental strand, 5446930 - 5446849
Alignment:
| Q |
326 |
agatattgaacctcctgaagtataccttaacctctcatgagcctctcacaaatacaattttgcaaagtagctcaaagaacaa |
407 |
Q |
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| T |
5446930 |
agatattgaacctactcaaatatagcttaacctctcacgagcctatgacaaatacaattttgaaaagtagctccaagtacaa |
5446849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 5994047 - 5993980
Alignment:
| Q |
324 |
acagatattgaacctcctgaagtataccttaacctctcatgagcctctcacaaatacaattttgcaaag |
392 |
Q |
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| T |
5994047 |
acagatattgaac-tcctaaagtacaccttaacctctcacgagcctttaacaaatacaattctgcaaag |
5993980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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