View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_high_13 (Length: 419)
Name: NF5684_high_13
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 18245662 - 18245296
Alignment:
| Q |
10 |
aagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctactactgatgcatgagaaagggaaagaagagaaaaaatgaaggagat |
109 |
Q |
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| T |
18245662 |
aagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctactactgatgcatgagaaagggaaagaagagaaaaaatgaaggagat |
18245563 |
T |
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| Q |
110 |
agctacaatcatcttcattttgttgatagtgttaggttttgtgtgtttttgtggtcaatttggttctactatatatagagagtggaatggtgaatatgtt |
209 |
Q |
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| T |
18245562 |
agctacaatcatcttcattttgttgatagtgttaggttttgtgtgtttttgtggtcaatttggttctactatatatagagagtggaatggtgaatatgtt |
18245463 |
T |
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| Q |
210 |
attactattgttattgaataatgttgaatttattcaacatggattgannnnnnngttgaaaggatagatattttgaggtaggatttgttgttcacgtgaa |
309 |
Q |
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| T |
18245462 |
attactattgttattgaataatgttgaatttattcaacatggatagatttttttgttgaaaggatagatattttgaggtaggatttgttgttcacgtgaa |
18245363 |
T |
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| Q |
310 |
tgttgaacttttttcctttggataacaacaagaagtgtctttttgtttgaatccaggacaataggat |
376 |
Q |
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| T |
18245362 |
tgatgaacttttttcctttgaataacaacaataagtgtctttttgtttgaattcaggacaataggat |
18245296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 18252766 - 18252576
Alignment:
| Q |
10 |
aagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctactactgatgcatgagaaagggaaagaagagaaaaaatgaaggagat |
109 |
Q |
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| T |
18252766 |
aagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagat |
18252667 |
T |
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| Q |
110 |
agctacaatcatcttca---ttttgttgatagtgttaggttttgtgtgtttttgtggtcaatttggttctactatatatagagagtggaat |
197 |
Q |
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| T |
18252666 |
agttagaatcatcttcatgttattgttgataatgttatattgtgtgtgtatttgtggtcaaattggttctattatatatagagagtggaat |
18252576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 18256802 - 18256992
Alignment:
| Q |
10 |
aagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctactactgatgcatgagaaagggaaagaagagaaaaaatgaaggagat |
109 |
Q |
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| T |
18256802 |
aagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagat |
18256901 |
T |
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| Q |
110 |
agctacaatcatcttca---ttttgttgatagtgttaggttttgtgtgtttttgtggtcaatttggttctactatatatagagagtggaat |
197 |
Q |
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| T |
18256902 |
agttagaatcatcttcatgttattgttgataatgttatattgtgtgtgtatttgtggtcaaattggttctattatatatagagagtggaat |
18256992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 30570681 - 30570605
Alignment:
| Q |
57 |
aaatctactactgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcattttgtt |
133 |
Q |
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||||||||||||||||||||||| | ||||| ||||||||||| ||| ||||||| | |||||||||||||||||| |
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| T |
30570681 |
aaatctactactgatgcatgagagaaggaaataagagaaaaaacgaataagatagcaagaatcatcttcattttgtt |
30570605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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