View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5684_high_15 (Length: 392)
Name: NF5684_high_15
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 1962707 - 1963087
Alignment:
| Q |
1 |
ctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1962707 |
ctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaactttaagggcaccctttgttgccttggt |
1962806 |
T |
|
| Q |
101 |
ggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatgtttactaccctgcttctgtcacctctttgtcttcatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962807 |
ggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatgtttactaccctgcttctgtcacctctttgtcttcatac |
1962906 |
T |
|
| Q |
201 |
ttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962907 |
ttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggatt |
1963006 |
T |
|
| Q |
301 |
ttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1963007 |
ttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatg |
1963087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 381
Target Start/End: Complemental strand, 2015714 - 2015342
Alignment:
| Q |
9 |
cttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgatg |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2015714 |
cttcaacttcagctcacactgactcactcactgccatctatacatcaggccttgaagtccttaactttaaagacaccctttgttgccttggtggttgata |
2015615 |
T |
|
| Q |
109 |
cattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatgtttactaccctgcttctgtcacctctttgtcttcatacttccattt |
208 |
Q |
| |
|
|| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| |||| |
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|
| T |
2015614 |
tatcagcaatggatgcactggattttgctaaggaattcaacttgttgtcctatgtttactaccctgcttcagccaccagtttgtcttcatacttctattt |
2015515 |
T |
|
| Q |
209 |
gctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggattttcttgac |
308 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||| || |||| |
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|
| T |
2015514 |
gctcaagttagataaggaaacatcatgcgagtacagagatcttcctgggcctattcaaataccaggtagtgttccgattcatggtcgggatctttttgag |
2015415 |
T |
|
| Q |
309 |
ctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatg |
381 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | ||| |||||| ||||||||||||| ||||||||||||| |
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|
| T |
2015414 |
ctagctcaagatagatccagtcaatcttacaaatacttactccaaggtgttgaaaaattgcgtctttttgatg |
2015342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 381
Target Start/End: Complemental strand, 2019097 - 2018725
Alignment:
| Q |
9 |
cttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgatg |
108 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2019097 |
cttcaaattcagctcacagtaattcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgatt |
2018998 |
T |
|
| Q |
109 |
cattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatgtttactaccctgcttctgtcacctctttgtcttcatacttccattt |
208 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || |||||| |||||||||||||||||| ||| |||| |||||| |||||||||||||||| |||| |
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|
| T |
2018997 |
cattagcaatcgatgcactagattttgctaaagagttcaacatgttgtcctatgtttactttccttcttcagtcaccagtttgtcttcatacttctattt |
2018898 |
T |
|
| Q |
209 |
gctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggattttcttgac |
308 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||||| |||||||| ||||||||||||||||||||| ||||| || |||||||||| |||| || ||||| |
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|
| T |
2018897 |
gctcaagttgaataaggaaacatcatgtcagtacaaagatcttctagagcctattcaaataccaggctgtgtaccaattcatggtcaggatcttgttgac |
2018798 |
T |
|
| Q |
309 |
ctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatg |
381 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||| |
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|
| T |
2018797 |
caagctcaagatagatcaagtcaatcttacaaattcttacttgaacgtgttgaaaaattccgtctttttgatg |
2018725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 340
Target Start/End: Complemental strand, 2008509 - 2008369
Alignment:
| Q |
200 |
cttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggat |
299 |
Q |
| |
|
|||| |||||| ||| ||||| ||||||| ||||||||||| |||||| | | ||||||||| |||||||||||||||| || | ||||| |||| |
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|
| T |
2008509 |
cttctatttgcctaagctggatgaggaaacatcatgtgagtatagagatatactagagcctataaaaataccaggttgtgtaccactccatggcaggga- |
2008411 |
T |
|
| Q |
300 |
tttcttga-cctagctcaagatagatcaagtcaatcttacaa |
340 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| ||||||| |
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|
| T |
2008410 |
tttcttgagcatagctcaagatagatcaagtcaagcttacaa |
2008369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 332
Target Start/End: Original strand, 1968523 - 1968638
Alignment:
| Q |
217 |
tggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggattttcttga-cctagctc |
315 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||| | ||||||||||| |||||||||| ||||| || || ||||| |||| | |||||| | |||||| |
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|
| T |
1968523 |
tggatgaggaaacatcatgtgagtatagagatataccagagcctataaaaataccaggctgtgtaccaatccatggcaggga-tctcttgagcgtagctc |
1968621 |
T |
|
| Q |
316 |
aagatagatcaagtcaa |
332 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1968622 |
aagatagatcaagtcaa |
1968638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 340
Target Start/End: Complemental strand, 2012124 - 2011984
Alignment:
| Q |
200 |
cttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggat |
299 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||| || |||| || || || || | ||||| |||| |
|
|
| T |
2012124 |
cttctatttgcctaagttggatgaggaaacaacatgtgagtacagagatctcccagagcctatcaaagtaccgggctgcgtaccactccatggcaggga- |
2012026 |
T |
|
| Q |
300 |
tttcttgacc-tagctcaagatagatcaagtcaatcttacaa |
340 |
Q |
| |
|
| |||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
2012025 |
tctcttgaccatagttcaagatagatcaagtcaagcttacaa |
2011984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 2012251 - 2012163
Alignment:
| Q |
73 |
ctttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctat |
161 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||||||| || || |||| |||||| | |||||||| ||||||||| ||||||||||| |
|
|
| T |
2012251 |
ctttaaggattccccttgtggccttggtggttgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctat |
2012163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 340
Target Start/End: Complemental strand, 2005129 - 2004989
Alignment:
| Q |
200 |
cttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggat |
299 |
Q |
| |
|
|||| |||||| ||||||||| | ||||| ||||||||||| ||||| | |||| |||||| |||||||||||||||| || || ||||| |||| |
|
|
| T |
2005129 |
cttctatttgcctaagttggatgaagaaacatcatgtgagtatggagatataccagtgcctataaaaataccaggttgtgtaccaatccatggcaggga- |
2005031 |
T |
|
| Q |
300 |
tttcttga-cctagctcaagatagatcaagtcaatcttacaa |
340 |
Q |
| |
|
| || ||| || | |||||||||| ||||||||| ||||||| |
|
|
| T |
2005030 |
tctcatgagcccaactcaagataggtcaagtcaagcttacaa |
2004989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 2005241 - 2005156
Alignment:
| Q |
88 |
ttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatgtttactaccct |
173 |
Q |
| |
|
|||| ||||||||||||||| || ||| |||| ||||| | ||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
2005241 |
ttgtggccttggtggttgattgttttgcatttgaagcactgagtattggtaaggaattcaacatgttgtcctatatttactaccct |
2005156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 39 - 353
Target Start/End: Original strand, 5901924 - 5902238
Alignment:
| Q |
39 |
ctgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgcta |
138 |
Q |
| |
|
||||||| | |||||||||| ||||| ||||||||||||||||| ||| ||| || ||||||||||| | ||| | || ||||||||||| |||| |
|
|
| T |
5901924 |
ctgccatatttacatcaggcattgaactccttaactttaaggactccccctgtggcactggtggttgattctttatctgccgaagcactagatttggcta |
5902023 |
T |
|
| Q |
139 |
aggaattcaacttgttgtcctatgtttactaccctgcttctgtcacctctttgtcttcatacttccatttgctcaagttggataaggaaacttcatgtga |
238 |
Q |
| |
|
|||| |||||| |||||||||||||||||| |||| || | | |||| ||||||||| |||||| |||||||||| |||||||||||||| |||||||| |
|
|
| T |
5902024 |
aggagttcaacatgttgtcctatgtttacttccctcctgcagccaccactttgtctttctacttctatttgctcaaattggataaggaaacatcatgtga |
5902123 |
T |
|
| Q |
239 |
gtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggattttcttgacctagctcaagatagatcaagtcaatcttac |
338 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||||||||||| || |||| |||||||||| | ||| || ||||||||||||||| || ||||||||| |
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|
| T |
5902124 |
gtacagagatctgccagaacctattcaagcaccaggttgtgtaccaattcgtggtcgggatctcgttgcccaagctcaagatagatcgagccaatcttac |
5902223 |
T |
|
| Q |
339 |
aagttctttctccaa |
353 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
5902224 |
aaattcttactccaa |
5902238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 18189870 - 18189931
Alignment:
| Q |
200 |
cttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagccta |
261 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
18189870 |
cttctatttgcctaagttggatgaggaaacaacatgtgagtacagaaatctaccagagccta |
18189931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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