View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_high_19 (Length: 329)
Name: NF5684_high_19
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 128 - 317
Target Start/End: Complemental strand, 2360453 - 2360264
Alignment:
| Q |
128 |
ccttatgtccaataagtcttcattttaagatgcatgcattcaatttaaaatccctgcaatactgataaacttaaatagttttcatttcctcttaattaag |
227 |
Q |
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| T |
2360453 |
ccttatgtccaataagttttcattttaagatgcatgcattcaatttaaaatccctgcaatactgataaacttaaatagttttcatttcctcttaattaag |
2360354 |
T |
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| Q |
228 |
gtgattcatttgaattctaatttagtactactaactatgtaagtatgccaatattctcaccaaaatggaagcaatattttctagcattca |
317 |
Q |
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| T |
2360353 |
gtgattcatttgaattctaatttagtactactaactatgtaaatattccaatattctcaccaaaatggaagcaatattttctagcattca |
2360264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 2360563 - 2360529
Alignment:
| Q |
18 |
catgcttggtccttgaaggtttgaacgattgtaac |
52 |
Q |
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| T |
2360563 |
catgcttggtccttgaaggtttgaacgattgtaac |
2360529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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