View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_high_21 (Length: 311)
Name: NF5684_high_21
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 30842660 - 30842961
Alignment:
| Q |
1 |
atcatccaaaccaagtatagtggataactcctcgatgaaacatgcatccacttcaggtaaatcaattcaattatattggtagaaaaattgctgacaaata |
100 |
Q |
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| T |
30842660 |
atcatccaaaccaagtatagtggataactcctcgatgaaacatgcatccacttcaggtaaatcaattcaattatattggtagaaaaattgctgacaaata |
30842759 |
T |
|
| Q |
101 |
tttgccatgacatata---ttgttgtgattaaatttgttgaagttgagaatgtctatttttcaaaagaaattgaaggttatattactatagttatgtgga |
197 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
30842760 |
tttgccatgacatatattgttgttgtgaataaatttgttgaagttgagaatctctatttttcaaaagaaattgaaggttgtattactatagt--tgtgga |
30842857 |
T |
|
| Q |
198 |
tgttatgcttaa-cagtgtagaatttctctttacgccctcaatatctctaagaccccgaaatcataacattgtagtccagaaaacggaaattgatcctct |
296 |
Q |
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|||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
30842858 |
tgttatgcttaaccagtgtagaatttctctttgcgccttcaatatctctaagaccccgaaatcataacattgtagcctagaaaacggaaattgatcctct |
30842957 |
T |
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| Q |
297 |
tcat |
300 |
Q |
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|||| |
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| T |
30842958 |
tcat |
30842961 |
T |
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