View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_high_26 (Length: 277)
Name: NF5684_high_26
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_26 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 28607744 - 28608000
Alignment:
| Q |
1 |
gtaaccaattagtctttgtggtgatgggactttttgttttctcatacataacagatattcttggtacacatgacgttgttggtgcatttgtatacgggtt |
100 |
Q |
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| T |
28607744 |
gtaaccaattagtctttgtggtgatgggactttttgttttctcatacataactgatattcttggtacacatgacgttgttggtgcatttgtatacgggtt |
28607843 |
T |
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| Q |
101 |
gattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctagcaccaatttactttattggaagtggattg |
200 |
Q |
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| T |
28607844 |
gattttacctcacggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctagcaccaatttactttattggcagtggattg |
28607943 |
T |
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| Q |
201 |
aaactcatgttcgtgcccgttttctatcaaccaagttggccctttacacttatcatt |
257 |
Q |
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| T |
28607944 |
aaactcatgttcgtgcccgttttctatcaaccaagttggccctttacacttatcatt |
28608000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 7589825 - 7589668
Alignment:
| Q |
13 |
tctttgtggtgatgggactttttgttttctcatacataacagatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctca |
112 |
Q |
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| T |
7589825 |
tctttgtggtcatgggaattttttatcgctcccacataacatatattctcggcacacctaacattgttggtgcttcaatgtaccggttgattttaccaca |
7589726 |
T |
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| Q |
113 |
tggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctag |
171 |
Q |
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| T |
7589725 |
cagtaa-tttgctgacatggtcacgtcaacgaccaatgattttggtggtgtgtttctag |
7589668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 13659125 - 13659293
Alignment:
| Q |
7 |
aattagtctttgtggtgatgggactttttgttttctcatacataacagatattcttggtacacatgacgttgttggtgcatttgtatacgggttgatttt |
106 |
Q |
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| T |
13659125 |
aattactctttcttgtgatggggatttttgtttgctcatgcataacagatattcttggaacacaagacattgttggggcttttgtgtacgggttgatttt |
13659224 |
T |
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| Q |
107 |
acctcatggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctagcacc |
175 |
Q |
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| T |
13659225 |
acctcacggtaaatttgctgatatcgtcactacactgactgatgatttttgcggcgggtttctagcacc |
13659293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 13651665 - 13651801
Alignment:
| Q |
33 |
tttgttttctcatacataacagatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcatggtaaatttgctgacatgg |
132 |
Q |
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| T |
13651665 |
tttgtttgctcatatataacaggtattcttggcacacaagatattgtcggagcttttgtgtacgggttgattttgcctcatggtaaatttgctgatatgg |
13651764 |
T |
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| Q |
133 |
tcacatcaatgactaatgattttggtggtgggtttct |
169 |
Q |
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| T |
13651765 |
tcacgtcaatgactgatgactttggtggcgagtttct |
13651801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 185
Target Start/End: Complemental strand, 439158 - 438975
Alignment:
| Q |
2 |
taaccaattagtctttgtggtgatgggactttttgttttctcatacataacagatattcttggtacacatgacgttgttggtgcatttgtatacgggttg |
101 |
Q |
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||||||| |||| ||||| | ||||| ||| | |||||||||| |||| | |||| |||||| |||||||| |||||||| || ||| ||||||||||| |
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| T |
439158 |
taaccaactagtttttgtctttatgggccttatggttttctcattcatagccgatactcttggcacacatgatgttgttggggcttttttatacgggttg |
439059 |
T |
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| Q |
102 |
attttacctcatggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctagcaccaatttacttt |
185 |
Q |
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| T |
439058 |
attttacctcacggtaaatttgctgacatggtcgtgtcaatgactaatgattttggtattggctttcttgcaccgatctacttt |
438975 |
T |
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